Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14570 972 / 0 AtAARE, AARE acylamino acid-releasing enzyme, acylaminoacyl-peptidase-related (.1) AT5G36210 83 / 4e-16 alpha/beta-Hydrolases superfamily protein (.1) AT2G47390 63 / 7e-10 Prolyl oligopeptidase family protein (.1) AT1G20380 54 / 3e-07 Prolyl oligopeptidase family protein (.1) AT1G76140 54 / 4e-07 Prolyl oligopeptidase family protein (.1.2) AT5G20520 47 / 3e-05 WAV2 WAVY GROWTH 2, alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G128700 [exp] 88 / 1e-17 AT5G36210 1049 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G196000 [exp] 62 / 1e-09 AT2G47390 1394 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.014G120600 [exp] 59 / 1e-08 AT2G47390 1466 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.005G247300 [exp] 57 / 6e-08 AT1G76140 1206 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.002G013900 [exp] 57 / 7e-08 AT1G76140 1165 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.005G247400 [exp] 55 / 3e-07 AT1G76140 1210 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.002G014000 [exp] 54 / 3e-07 AT1G76140 1217 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.018G064800 [exp] 46 / 7e-05 AT5G20520 529 / 0.0 WAVY GROWTH 2, alpha/beta-Hydrolases superfamily protein (.1) Potri.006G145200 [exp] 45 / 0.0001 AT5G20520 511 / 0.0 WAVY GROWTH 2, alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039405 [exp] 1042 / 0 AT4G14570 902 / 0.0 acylamino acid-releasing enzyme, acylaminoacyl-peptidase-related (.1) Lus10015363 [exp] 1004 / 0 AT4G14570 871 / 0.0 acylamino acid-releasing enzyme, acylaminoacyl-peptidase-related (.1) Lus10006641 [exp] 247 / 8e-75 AT4G14570 194 / 5e-56 acylamino acid-releasing enzyme, acylaminoacyl-peptidase-related (.1) Lus10032765 [exp] 89 / 6e-18 AT5G36210 606 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10021758 [exp] 66 / 1e-10 AT5G36210 949 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10010007 [exp] 63 / 1e-09 AT2G47390 1458 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10021235 [exp] 54 / 6e-07 AT1G76140 1184 / 0.0 Prolyl oligopeptidase family protein (.1.2) Lus10025026 [exp] 48 / 4e-05 AT2G47390 1339 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10025027 [exp] 47 / 6e-05 AT2G47390 1330 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10011949 [exp] 45 / 0.0001 AT5G20520 437 / 1e-155 WAVY GROWTH 2, alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF07676 [poplar] [flax] PD40 WD40-like Beta Propeller Repeat CL0028 [poplar] [flax] AB_hydrolase PF12695 [poplar] [flax] Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.008G160400.1 pacid=42805939 polypeptide=Potri.008G160400.1.p locus=Potri.008G160400 ID=Potri.008G160400.1.v4.1 annot-version=v4.1 ATGGAAAGAGCATACCTGGTAAAGCTTAATTGGTTGTCGTGTCTCCCTCCTCCTCCTCCACCCCATCTTCTTTCTTTAACAATATCTCCTCACTCTCCCA CTCCCAGTCTCCTTCGCTCCTCTTTTTCCGCTCCTCGTTCGCTCTCTACCAAACGATCTTCTGCCATTCAAGCATTAATGGACGCCTCTGTATCTTCCTC GCCGAAGGATCTGCCAGTTGGGTTAGATGCTAAAACTGAGGAAGAGTATGCTTCCCTTTCCAGTTTACTTCAAGAGTTCACTAGCATCCCTAACATTGAC AAGGCATGGACTTTTAAGTCTAACACTGGAATTGGTTCCCAGGCAATGTTTTCGATTAGCCAAGCAAATCTTCTGGCTAATAAGAGGAGGAAGTATGCTC TATCTGCTAATATCTCGAAAGGGAGTGGCAATTCTGTTAACTTTCAATGGTCTCCATTTCCTGTTGAGATGACCGGTGTGTCTACAGTTGTTCCATCAGC ATCAGGTTCGAAGCTTCTTGTTGTTCGGAATCCGGAAAATGAATCTCCCACCCGTTTTGAGATTTGGAATCAAGGTCATGTGGAAAAGGAATTCAACATC CCTCAATCTGTACACGGTTCGGTGTATTGTGATGGATGGTTTGAGGGGATCTCATGGAACTCAAACGAAACTCTTATTGCTTATGTTGCCGAGGAGGCCT CACCATCCAAGCCTACATTTAATGATTCGGGCTATAAAAAAGGTGGTTCAGCAGATAAGGACTGTGGTAGCTGGAAAGGTCAGGGGGAATGGGAGGAGGA CTGGGGAGAAACCTATGCAGGGAAAAGGCAGCCTGCACTTTTTTGGATTGACATTAACAGCGGACAAGTACAGCCTGTCAAAGGAATTTCAAAGTCCTTG AGCGTTGGCCAAGTTGTCTGGGCTCCATCAACCCAAGGCTTGCATCAGTATTTGGTGTTTGTGGGTTGGTCATCAAATCCAAGAAAGCTTGGCATAAAAT ACTGCTACAACAGGCCATGTGCATTATATGCAGCTAGAGCACCAGTTTATGCATCAGAAGCCAATGATTTAGAGCTCAAAGAGAGTCCAAACGAAGACTC ACCCGTTCTTAACCTAACTCAGAGCATAAGTAGTGCCTTCTTTCCATCATTCAGCCCAGATGGAAGGTTCCTTGTGTTTCTATCTGGAAGAAGTTCTGTA GATTCGGGTGCACATTCTGCAACAGATTCACTTCACAGAATTGATTGGCCAGTGAATGGACAATTGTCCTCTTTAAAAATTATTGATGTGATTCCTATTG TGCAGAGCGCAGAGGATGGTTGCTTCCCAGGGCTTTACTGCTCTAATTTTATTCCTAATCCATGGCTTTCAGATGGATGCACTATGATTGTATCTTCAAC ATGGGGCAGCAGTGAAGTTATACTTTCTGTGAATGTGTTGAGTGGGGATGTATCACGTATTAGTCCCACAGACTCCAATTTTTCATGGAATCTTCTTACT CTAGATGGAGACAGCATTATTGCCGTGTTTAGCAGTCCAGTAGATGTACCTCAAATCAGGTATGGTTATCTTGTTGATAAGGAAATTAAAAATGCTGCAT GGGATTGGTCAGATGTATCAAGCCCAATATTCGGATGCTCTGCGAAGGTTAATTCTTTGCTCTCTTCTCGTCAGTTCACTATATTGAAGATTCCAGTCAA GGATGTTTCTGAATGCCTGACAAAAGGTGCTAGCAAACCTTTTGAAGCTATTTTTGTGTCTCGCCAATCTAAGAAGAATGATGTTTGTGATCCACTTATA GTTGTGCTTCATGGAGGCCCACATTCTGTCTCATTGTCAGGCTTTGCAAAGTCCTATGCATTTCTGTCTTCACTAGGTTACAGCTTGTTGATTGTAAATT ACAGAGGTTCACTTGGATTTGGTGAGGAAGCTTTGCAATCTCTTCCAGGGAAAGTTGGTTCACAGGATGTCAAGGATGTAATTACAGCAATAGATCATGT GATTGACACGGGTGTTGCTAGCCCCTCCAAAATAGCTGTGATTGGTGGTTCCCATGGTGGCTTTCTCACAACTCACTTAATTGGCCAGGCACCAGATAAA TTTGTTGCTGCAGCTGCGAGAAATCCCGTCTGTAACCTTGTATCAATGGTTGGCATAACAGACATCCCTGATTGGTGCTATGTGGAAACCTATGGAGTTG AGGGGAAAACTAAATTTACGGAAGCACCCTCAGCTGAGGACCTGGCTCTCTTTCACAGCAAATCTCCCATATCACACATCTCAAAGGTCAAAACACCGAC CATTTTTGTTCTAGGTGCTCAGGATCTTCGTGTTCCATTGTCTAATGGGTTGCAATATGCACGGGCATTGAAAGAGAAAGGCGTTGAGGTCAAAATCCTC GTGTTTCCCAATGATGTCCATGCGATTGAAAGACCCCAATCCGACCACGAAGGCTTCCTCAACATTGCAGTATGGTTCAACAAGTATTGTAAATAA
AA sequence Show only first row Show all	>Potri.008G160400.1 pacid=42805939 polypeptide=Potri.008G160400.1.p locus=Potri.008G160400 ID=Potri.008G160400.1.v4.1 annot-version=v4.1 MERAYLVKLNWLSCLPPPPPPHLLSLTISPHSPTPSLLRSSFSAPRSLSTKRSSAIQALMDASVSSSPKDLPVGLDAKTEEEYASLSSLLQEFTSIPNID KAWTFKSNTGIGSQAMFSISQANLLANKRRKYALSANISKGSGNSVNFQWSPFPVEMTGVSTVVPSASGSKLLVVRNPENESPTRFEIWNQGHVEKEFNI PQSVHGSVYCDGWFEGISWNSNETLIAYVAEEASPSKPTFNDSGYKKGGSADKDCGSWKGQGEWEEDWGETYAGKRQPALFWIDINSGQVQPVKGISKSL SVGQVVWAPSTQGLHQYLVFVGWSSNPRKLGIKYCYNRPCALYAARAPVYASEANDLELKESPNEDSPVLNLTQSISSAFFPSFSPDGRFLVFLSGRSSV DSGAHSATDSLHRIDWPVNGQLSSLKIIDVIPIVQSAEDGCFPGLYCSNFIPNPWLSDGCTMIVSSTWGSSEVILSVNVLSGDVSRISPTDSNFSWNLLT LDGDSIIAVFSSPVDVPQIRYGYLVDKEIKNAAWDWSDVSSPIFGCSAKVNSLLSSRQFTILKIPVKDVSECLTKGASKPFEAIFVSRQSKKNDVCDPLI VVLHGGPHSVSLSGFAKSYAFLSSLGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVKDVITAIDHVIDTGVASPSKIAVIGGSHGGFLTTHLIGQAPDK FVAAAARNPVCNLVSMVGITDIPDWCYVETYGVEGKTKFTEAPSAEDLALFHSKSPISHISKVKTPTIFVLGAQDLRVPLSNGLQYARALKEKGVEVKIL VFPNDVHAIERPQSDHEGFLNIAVWFNKYCK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14570		AtAARE, AARE	acylamino acid-releasing enzym...		Potri.008G160400 [exp]	0	1
AT2G32170			S-adenosyl-L-methionine-depend...		Potri.016G021900 [exp]	1.41	0.9386
AT2G32170			S-adenosyl-L-methionine-depend...		Potri.016G021400 [exp]	3.00	0.9193
AT1G73880		UGT89B1	UDP-glucosyl transferase 89B1 ...		Potri.012G065100 [exp]	3.16	0.9211
AT1G52540			Protein kinase superfamily pro...		Potri.001G204000 [exp]	8.48	0.8845
AT1G28320		DEG15	protease-related (.1)		Potri.011G056100 [exp]	10.48	0.8950
AT5G49580			Chaperone DnaJ-domain superfam...		Potri.010G148900 [exp]	10.95	0.8866
AT1G11050			Protein kinase superfamily pro...		Potri.017G133000 [exp]	11.18	0.9107
					Potri.002G139000 [exp]	13.85	0.8791
AT1G09700		DRB1, HYL1	HYPONASTIC LEAVES 1, DSRNA-BIN...		Potri.017G126700 [exp]	14.42	0.8913
AT1G80360			Pyridoxal phosphate (PLP)-depe...		Potri.001G177000 [exp]	15.23	0.8759

Compare expression of checked genes

Potri.008G160400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.