Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33580 217 / 8e-62 Protein kinase superfamily protein (.1) AT3G21630 209 / 2e-59 LYSMRLK1, CERK1 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) AT2G23770 194 / 8e-54 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT1G70460 191 / 3e-52 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT3G24790 184 / 3e-52 Protein kinase superfamily protein (.1) AT1G23540 191 / 5e-52 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT1G69790 182 / 1e-51 Protein kinase superfamily protein (.1) AT1G51940 188 / 2e-51 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT2G02800 182 / 4e-51 Kin2, APK2B protein kinase 2B (.1.2) AT1G10620 187 / 6e-51 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G078700 [exp] 993 / 0 AT2G23770 288 / 5e-89 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.008G160501 [exp] 384 / 4e-131 AT2G23770 66 / 3e-12 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.014G040000 [exp] 288 / 5e-89 AT2G23770 345 / 1e-110 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G128300 [exp] 268 / 5e-81 AT2G23770 394 / 2e-129 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G259600 [exp] 249 / 1e-73 AT2G33580 637 / 0.0 Protein kinase superfamily protein (.1) Potri.005G128200 [exp] 238 / 1e-69 AT2G23770 514 / 4e-176 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.001G332800 [exp] 226 / 4e-65 AT3G01840 471 / 4e-158 Protein kinase superfamily protein (.1) Potri.007G032100 [exp] 225 / 1e-64 AT2G23770 513 / 6e-175 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.007G032300 [exp] 220 / 2e-63 AT2G33580 247 / 6e-73 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021889 [exp] 648 / 0 AT2G23770 256 / 2e-77 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10039406 [exp] 586 / 0 AT2G33580 229 / 4e-68 Protein kinase superfamily protein (.1) Lus10041171 [exp] 548 / 0 AT2G33580 224 / 1e-64 Protein kinase superfamily protein (.1) Lus10016793 [exp] 317 / 7e-100 AT3G21630 222 / 9e-64 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10022487 [exp] 310 / 2e-92 AT5G66631 707 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016299 [exp] 287 / 3e-88 AT2G23770 368 / 3e-119 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10022488 [exp] 250 / 2e-74 AT2G23770 391 / 2e-128 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10000577 [exp] 225 / 7e-65 AT2G23770 490 / 1e-166 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10008586 [exp] 223 / 9e-64 AT2G33580 594 / 0.0 Protein kinase superfamily protein (.1) Lus10019662 [exp] 215 / 2e-63 AT2G33580 198 / 3e-57 Protein kinase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G160600.1 pacid=42808058 polypeptide=Potri.008G160600.1.p locus=Potri.008G160600 ID=Potri.008G160600.1.v4.1 annot-version=v4.1 ATGAGACCCGCATCCCGTTTAGTCTCTTCTCTCCTCTTCTTTCTCTCTTACAGTAATATCCTCCACCATTTGCAAGCCCAGCCAAGCACTCAAGGGTTCA CCTGCCCAGCCAACCAGAGTTCCTTTCCATGTCAAACCTATGCCTTCTACCGAGCCTCAGCTCCTAACTTCCTTGACCTTGCCTCAATCGGTGACCTTTT CTCGGTTAGCCGCCTTATGATATCAAAACCAAGTAACATCTCCTCTCCAACCTCACCTCTCATCCCCAATCAACCCCTCTTTGTCCCTTTATCATGTTCT TGCAACCCCATCAATAGCACTAGCATTTCCTCTGCAAACATCACATATACCATCGAGGCAGGCAACACTTTCTACATTGTCTCGACTGAATACTTCCAAA ACCTTACGACCTACCAGTCTGTTGAGCTTTTCAACCCTACACTTATCCCCGAACTACTCGACATAGGAGTAGAGGTGATCTTTCCAATATTTTGCAAGTG TCCTAATCAAACCCAGTTGCAAAACAAGGTGAATTATCTGGTATCTTATGTGTTTCAGCCTTCTGATAACTTATCTTCAGTTGCTTCAACATTTGGAGTT GAAACACAATCTATTGTTGATGTTAATGGCAATAACATCCAGCCTTATGATACCATATTCGTTCCAGTCAATCAACTTCCACAACTGGCACAACCTACAG TAGTTGTTCCTTCTGGGGCGCCGCCCCCTGAGAAGACAGAGAGGAAAGGTGTGATTATAGGATTAGCAGTTGGGCTAGGAATTGCTGGGCTTTTACTGGT CTTGGTAAGTGGGGTTTGGTTTTATAGAGAGGGTGTGTTGAAGAAGAGAAGAGATGTTGAGAAAGTTGAGGAGAAGCGTAGGATGCAGTTGAATGGGGGA AGTAAAGGGTTGAAGGATATAGAAGTGAGTTTGATGGCAGATGTTTCAGATTGCTTGGATAAGTACAGGGTCTTTAAGATTGATGAACTGAAAGAAGCTA CTAACGGGTTCAGTGAAAATTGCTTGATTGAAGGATCTGTGTTTAAGGGTTCCATAAATGGAGAGACCTATGCCATCAAGAAGATGAAGTGGAATGCCTG TGAGGAGCTCAAGATATTGCAGAAGGTAAACCATGGCAACTTGGTGAAGCTAGAGGGCTTTTGCATAGACCCCGAGGATGCAAATTGCTATCTGGTCTAT GAGTTCGTAGACAGTGGCTCTCTACATTCGTGGTTGCATCGCAACGAGAAAGAAAAACTAAGCTGGAAAACAAGGTTACGCGTTGCAATTGATGTTGCAA ATGGTCTCCAATACATCCATGAGCACACTAGGCCAAGGGTTGTGCACAAAGACATTAAAAGCAGCAATATCCTCTTGGACTCCAGCATGAGAGCCAAAAT TGCCAACTTTGGACTAGCAAAAACAGGCTGCAACGCCATAACAATGCACATTGTTGGCACTCAAGGCTACATTGCGCCTGAATATTTAGCTGATGGTGTG GTGTCAACGAGAATGGATGTTTTCTCTTTTGGTGTGGTTTTGCTTGAGCTAATCTCAGGAAGAGAAGCAATTGATGAAGAAGGCAAGGTTTTGTGGGCAG AAGCTATTGGAGTTCTGGAAGGAAATGTTGAAGAGAGGAGGAAGGTAAAGAGATTGACAGCATGGATGGACAAGGTTCTTTTAGAGGAGTCATGCTCAAT GGAGAGTGTAATGAATACAATGGCTGTTGCAATTGCTTGCTTGCATAGAGATCCATCAAAGAGGCCTAGCATGGTGGATATTGTCTATGCCTTGTGCAAG AGCGATGATTTGTTTTTTGACATCTCAGAAGACGGATTGTCAAACCCTCAGGTAATGGCAAGATAA
AA sequence Show only first row Show all	>Potri.008G160600.1 pacid=42808058 polypeptide=Potri.008G160600.1.p locus=Potri.008G160600 ID=Potri.008G160600.1.v4.1 annot-version=v4.1 MRPASRLVSSLLFFLSYSNILHHLQAQPSTQGFTCPANQSSFPCQTYAFYRASAPNFLDLASIGDLFSVSRLMISKPSNISSPTSPLIPNQPLFVPLSCS CNPINSTSISSANITYTIEAGNTFYIVSTEYFQNLTTYQSVELFNPTLIPELLDIGVEVIFPIFCKCPNQTQLQNKVNYLVSYVFQPSDNLSSVASTFGV ETQSIVDVNGNNIQPYDTIFVPVNQLPQLAQPTVVVPSGAPPPEKTERKGVIIGLAVGLGIAGLLLVLVSGVWFYREGVLKKRRDVEKVEEKRRMQLNGG SKGLKDIEVSLMADVSDCLDKYRVFKIDELKEATNGFSENCLIEGSVFKGSINGETYAIKKMKWNACEELKILQKVNHGNLVKLEGFCIDPEDANCYLVY EFVDSGSLHSWLHRNEKEKLSWKTRLRVAIDVANGLQYIHEHTRPRVVHKDIKSSNILLDSSMRAKIANFGLAKTGCNAITMHIVGTQGYIAPEYLADGV VSTRMDVFSFGVVLLELISGREAIDEEGKVLWAEAIGVLEGNVEERRKVKRLTAWMDKVLLEESCSMESVMNTMAVAIACLHRDPSKRPSMVDIVYALCK SDDLFFDISEDGLSNPQVMAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33580			Protein kinase superfamily pro...		Potri.008G160600 [exp]	0	1
AT5G41150		ATRAD1, UVH1	ULTRAVIOLET HYPERSENSITIVE 1, ...		Potri.001G150400 [exp]	9.00	0.8686
AT1G15780			unknown protein		Potri.003G028089 [exp]	9.16	0.8441
AT4G00980			zinc knuckle (CCHC-type) famil...		Potri.002G171900 [exp]	9.53	0.8586
AT2G17930			Phosphatidylinositol 3- and 4-...		Potri.007G057900 [exp]	10.95	0.8660
AT4G12070			unknown protein		Potri.003G207600 [exp]	11.53	0.8350
AT4G27220			NB-ARC domain-containing disea...		Potri.011G124000 [exp]	11.61	0.8541
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Potri.001G276600 [exp]	13.26	0.8412
AT1G80000			CASC3/Barentsz eIF4AIII bindin...		Potri.001G178900 [exp]	15.68	0.8611
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Potri.003G154800 [exp]	16.24	0.8547
AT2G27100	C2H2ZnF	SE	C2H2 zinc-finger protein SERRA...		Potri.004G196400 [exp]	17.46	0.8629

Compare expression of checked genes

Potri.008G160600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.