Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43670 1113 / 0 Sec23/Sec24 protein transport family protein (.1) AT3G23660 683 / 0 Sec23/Sec24 protein transport family protein (.1.2) AT1G05520 676 / 0 Sec23/Sec24 protein transport family protein (.1) AT2G21630 607 / 0 Sec23/Sec24 protein transport family protein (.1) AT4G14160 581 / 0 Sec23/Sec24 protein transport family protein (.1.2.3) AT4G01810 102 / 4e-22 Sec23/Sec24 protein transport family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G078200 [exp] 1455 / 0 AT5G43670 1136 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.019G003100 [exp] 672 / 0 AT3G23660 1181 / 0.0 Sec23/Sec24 protein transport family protein (.1.2) Potri.001G307400 [exp] 670 / 0 AT1G05520 1235 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.014G178500 [exp] 652 / 0 AT2G21630 1028 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.002G238500 [exp] 426 / 1e-140 AT2G21630 767 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.014G112600 [exp] 99 / 6e-21 AT4G01810 1364 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.002G187100 [exp] 90 / 3e-18 AT4G01810 1352 / 0.0 Sec23/Sec24 protein transport family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022219 [exp] 1238 / 0 AT5G43670 1098 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10008800 [exp] 1024 / 0 AT5G43670 912 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10008801 [exp] 912 / 0 AT5G43670 809 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10021963 [exp] 674 / 0 AT1G05520 1321 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10041256 [exp] 663 / 0 AT1G05520 1319 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10019516 [exp] 543 / 0 AT2G21630 1093 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10043359 [exp] 540 / 0 AT2G21630 1098 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10021964 [exp] 236 / 6e-71 AT1G05520 486 / 9e-168 Sec23/Sec24 protein transport family protein (.1) Lus10010078 [exp] 108 / 4e-24 AT4G01810 1317 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10007190 [exp] 107 / 2e-23 AT4G01810 1314 / 0.0 Sec23/Sec24 protein transport family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0092 [poplar] [flax] ADF PF00626 [poplar] [flax] Gelsolin Gelsolin repeat CL0092 [poplar] [flax] PF04810 [poplar] [flax] zf-Sec23_Sec24 Sec23/Sec24 zinc finger CL0128 [poplar] [flax] vWA-like PF04811 [poplar] [flax] Sec23_trunk Sec23/Sec24 trunk domain CL0128 [poplar] [flax] PF04815 [poplar] [flax] Sec23_helical Sec23/Sec24 helical domain CL0128 [poplar] [flax] PF08033 [poplar] [flax] Sec23_BS Sec23/Sec24 beta-sandwich domain
Representative CDS sequence Show only first row Show all	>Potri.008G161300.1 pacid=42806816 polypeptide=Potri.008G161300.1.p locus=Potri.008G161300 ID=Potri.008G161300.1.v4.1 annot-version=v4.1 ATGGACTTCGTTGAATTGGAGGCGATCGAAGGCCTACGTTGGTCGTGGAACGCATGGCCAACTACCAAGAACCAAGTTTCTTCCCTTGTAATCCCACTTA GCATCATGTGCACTCCACTGATGCAATCAACTGAGCTTCCGATTCTGACTTATGACCCTCTAATCTGCACTCGCTGTGCTGCTGTTTTGAACCCTTATGC TCGTGTAGATTATCAGTCTCGCATTTGGGTTTGTCCTTTCTGCTACAACAGGAATCCTTTCCCTATTTCTTATTCAGGTATCGGCGAAACCAATCTTCCT GCTGAACTTTTTCCTACTTACAATACTGTAGAATACAAAATTGACAAGGTTGATTCTAAATTTCGGTCTAATTTGCATTTGGGTTACGGTTGGTCTAATG GGCTTTCTTCGTCTAATGTGTCATTGTCGTCTATGATGTCCGTGGGGACTCCGAGGAGCATTGGTGGTGCTGGTGTTGGTGGGGAGGTCAGGGGATTTGC GGGGCCTGTACCGGTGTTTGTGTTTCTAGTGGATGCTTGTATGGTCGAGGAGGAGTTGAGGGCAGTGAAGAACGAGTTGTTGTTGGTTGTTGAGCAGTTG CCGGAGAATGCCTTGGTTGGGCTAATTACTTTCGATGCAATGGTTAGGGTTTATGATTTGGGGTTTTCTGACTGCTCTAGGGTTGTTGTGTTTCATGGAG GACGTGAGGTTTCGTCAGAGCAGACCCAACAATTTCTGGGTATATACAGCACCAAGCAGCAGCAACAGCAACTTGGGAAGACTCCAGTTATCCAAAAGCT GGGATTTTTGCTACCTGTATCTGAATGTGAGTTCAATATCACCACTGCCATTGAAGAAATCTGTTCTTTAGCTGTAGTCATGCCAGGACATCGCCCTCAA AGGTGTACAGGAGCTGCAATATCAGTTGCACTTGGACTTCTTGAAGGATGCTCAGTGAATACAGGCTCCCGGATCATGATTTTCACATCTGGACCTGCAA CTTTGGGGCCAGGGATTGTTGTGGACTCAGATCTTAGCAATGCCATCAGAACTCATGGAGACCTCATTAATGGTCATGCATCGTACTATACAAAATCCTG TAGCTTCTACAATCAGCTTTCACAGAGATTATCTGATGCATCTGTTGTCCTAGATCTTTTTGCTTGTTCTCTTGATCAAGTAGGTGCAGCAGAATTAAAA GGCCCTGTTGAGAGCTCTGGTGGGTTCATGATGTTAGGGGAGTTGTTTGAGTCTGATCAATTCAGAAAGTGCTTGCGGCAAATTTTTAGTCATGACGAAG AGGGGAATTTGAAGATGTATTTTGATGCAACAATTGAAGTGGTGACAACTAAAGATGTAAAAATCTGTGGAGCACTTGGACCATGCATTTCTCTTCGGAA AAAGAACAGTGTAGTCAGTGACCGTGAGACTGGGGAGGGTGGCACCTATAAGTGGAAGCTTGGTACACTAACTAATAGAACATGCATAGCTTTTTTCTTT GAATTATGTGATGAACAGAGGGCTGAACCTGGGTCTGCGTTTTTAGTACAGTTTATAACACGCTACAGGCATGGGAACATGGGAGTCCGGAAGAGGGTTA CGACTGCTGCAAGAAGATGGGTTGAAAACAAGTCACCAGAAATCACTGCTGGTTTTGATCAGGAAACAGCAGCTTCAGTAATGGCCAGGCTAGCCATTTA CCGAGCAGAGAGATGTTTTGCTCGAGATGTTATAAGATGGCTGGATGACGACCTTATTTGCTTTGCTTCCAAGTTTGGAGACTATATCCAGGAAGATCCG TCTTCCTTCCGCTTGTCATCGAACTTTTCTCTTTACCCTCAGTTCATGTATTACTTGAGGAGGTCCCAGTTCATAGATGTTTTCAACTGTACCCCTGATG AGACTGCATTCTTCCGCCTGATGCTGAACCGTGAAGGGGTAGTGGGTTCCCTTATCATGATACAACCTACACTTTTTCAATACTCTTTTGATGGGCCTCC TGTTCCTGTGCTCCTAGATGTTCGCTCCATTTTTGCTGACGTTATTTTGCTCTTTGATTCCTACTTCCATGTGGTGATTCATTATGGGTCCAAGATTGCT CAGTGGAAAAAGCTTGGTTACCACAAAGATCCAAACCATGAGAATCTGAGAAAGCTTTTGGAAGCTCCTGAAATTGATGCACAGCAAGTGATGGTGGAAC GAGTTCCAGCACCCAAGCTAATAAAGTGCGATCAACACAGTAGTCAAGCTAGGTTTCTTCTAGCCAAGTTAAATCCATCCGTGACTCAGAATTCAACATT CATAGATGGGTCAGAAATCATACTTACTGATGATTTGAGCTTGCAAGATTTTATAGATCATTTGCAGGCCCTGGCTGTGAAGGGTTAA
AA sequence Show only first row Show all	>Potri.008G161300.1 pacid=42806816 polypeptide=Potri.008G161300.1.p locus=Potri.008G161300 ID=Potri.008G161300.1.v4.1 annot-version=v4.1 MDFVELEAIEGLRWSWNAWPTTKNQVSSLVIPLSIMCTPLMQSTELPILTYDPLICTRCAAVLNPYARVDYQSRIWVCPFCYNRNPFPISYSGIGETNLP AELFPTYNTVEYKIDKVDSKFRSNLHLGYGWSNGLSSSNVSLSSMMSVGTPRSIGGAGVGGEVRGFAGPVPVFVFLVDACMVEEELRAVKNELLLVVEQL PENALVGLITFDAMVRVYDLGFSDCSRVVVFHGGREVSSEQTQQFLGIYSTKQQQQQLGKTPVIQKLGFLLPVSECEFNITTAIEEICSLAVVMPGHRPQ RCTGAAISVALGLLEGCSVNTGSRIMIFTSGPATLGPGIVVDSDLSNAIRTHGDLINGHASYYTKSCSFYNQLSQRLSDASVVLDLFACSLDQVGAAELK GPVESSGGFMMLGELFESDQFRKCLRQIFSHDEEGNLKMYFDATIEVVTTKDVKICGALGPCISLRKKNSVVSDRETGEGGTYKWKLGTLTNRTCIAFFF ELCDEQRAEPGSAFLVQFITRYRHGNMGVRKRVTTAARRWVENKSPEITAGFDQETAASVMARLAIYRAERCFARDVIRWLDDDLICFASKFGDYIQEDP SSFRLSSNFSLYPQFMYYLRRSQFIDVFNCTPDETAFFRLMLNREGVVGSLIMIQPTLFQYSFDGPPVPVLLDVRSIFADVILLFDSYFHVVIHYGSKIA QWKKLGYHKDPNHENLRKLLEAPEIDAQQVMVERVPAPKLIKCDQHSSQARFLLAKLNPSVTQNSTFIDGSEIILTDDLSLQDFIDHLQALAVKG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G43670			Sec23/Sec24 protein transport ...		Potri.008G161300 [exp]	0	1
AT1G16220			Protein phosphatase 2C family ...		Potri.001G473300 [exp]	1.73	0.9146
AT4G27190			NB-ARC domain-containing disea...		Potri.018G136700 [exp]	2.23	0.9305
AT5G42620			metalloendopeptidases;zinc ion...		Potri.002G133300 [exp]	3.87	0.8922
AT1G66680		AR401	S-adenosyl-L-methionine-depend...		Potri.012G068600 [exp]	4.24	0.9214
AT4G27220			NB-ARC domain-containing disea...		Potri.018G145572 [exp]	4.89	0.9144
AT2G16950		ATTRN1	transportin 1 (.1.2)		Potri.009G138200 [exp]	6.70	0.9055
AT2G20300		ALE2	Abnormal Leaf Shape 2, Protein...		Potri.002G254600 [exp]	7.74	0.9020
AT1G09740			Adenine nucleotide alpha hydro...		Potri.005G157100 [exp]	8.48	0.8928
AT5G51980	C3HZnF		Transducin/WD40 repeat-like su...		Potri.014G077800 [exp]	8.83	0.8654
AT1G07860			unknown protein		Potri.009G093700 [exp]	12.04	0.8766

Compare expression of checked genes

Potri.008G161300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.