Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30580 317 / 4e-105 BMI1A, DRIP2 DREB2A-interacting protein 2 (.1) AT1G06770 288 / 6e-94 DRIP1 DREB2A-interacting protein 1 (.1.2) AT3G23060 118 / 5e-29 RING/U-box superfamily protein (.1) AT5G13250 71 / 4e-13 RING finger protein (.1) AT1G28080 52 / 2e-07 RING finger protein (.1) AT5G44280 50 / 2e-06 ATRING1A ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) AT1G03770 48 / 7e-06 ATRING1B ARABIDOPSIS THALIANA RING 1B, RING 1B (.1.2.3) AT1G61140 46 / 4e-05 EDA16 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) AT4G21070 42 / 0.0007 ATBRCA1 ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, breast cancer susceptibility1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G077800 [exp] 583 / 0 AT2G30580 352 / 4e-118 DREB2A-interacting protein 2 (.1) Potri.005G219000 [exp] 321 / 2e-106 AT2G30580 399 / 5e-137 DREB2A-interacting protein 2 (.1) Potri.002G044100 [exp] 317 / 6e-105 AT2G30580 382 / 2e-130 DREB2A-interacting protein 2 (.1) Potri.013G042000 [exp] 186 / 2e-54 AT2G30580 362 / 5e-122 DREB2A-interacting protein 2 (.1) Potri.005G054400 [exp] 174 / 1e-49 AT2G30580 310 / 5e-102 DREB2A-interacting protein 2 (.1) Potri.005G054100 [exp] 134 / 3e-36 AT2G30580 145 / 4e-40 DREB2A-interacting protein 2 (.1) Potri.001G062700 [exp] 71 / 4e-13 AT5G13250 202 / 2e-61 RING finger protein (.1) Potri.003G164800 [exp] 69 / 2e-12 AT5G13250 218 / 1e-67 RING finger protein (.1) Potri.004G137200 [exp] 63 / 9e-11 AT5G13250 92 / 9e-21 RING finger protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014749 [exp] 294 / 5e-96 AT2G30580 391 / 1e-133 DREB2A-interacting protein 2 (.1) Lus10021993 [exp] 239 / 6e-75 AT2G30580 276 / 5e-89 DREB2A-interacting protein 2 (.1) Lus10042532 [exp] 236 / 6e-74 AT1G06770 267 / 9e-86 DREB2A-interacting protein 1 (.1.2) Lus10006558 [exp] 169 / 2e-48 AT2G30580 252 / 2e-80 DREB2A-interacting protein 2 (.1) Lus10003261 [exp] 169 / 2e-47 AT2G30580 274 / 9e-88 DREB2A-interacting protein 2 (.1) Lus10033860 [exp] 165 / 2e-46 AT2G30580 386 / 1e-131 DREB2A-interacting protein 2 (.1) Lus10039845 [exp] 53 / 3e-07 AT5G44280 370 / 2e-122 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) Lus10018609 [exp] 52 / 4e-07 AT5G44280 375 / 3e-124 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF00097 [poplar] [flax] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.008G161500.2 pacid=42805799 polypeptide=Potri.008G161500.2.p locus=Potri.008G161500 ID=Potri.008G161500.2.v4.1 annot-version=v4.1 ATGATGTTAGGCCAGGTGGTGAAGGTTCAAAAAGAGAGGATAGCGGCATGCATGACTTGTCCTCTTTGCAACAAGCTCTTTAGAGAAGCCACTACTATCT CTGAGTGCCTCCATACTTTTTGCAGAAAATGCATATACATGAAGATAACTGATGAGGAGTTGGATAGTTGTCCAGTTTGTGATATTAAATTAGGTTGTTC TCCACTTGAGAAGCTCAGGGCAGACCACAGCTTGCAAGATTTAAGGGCCAGAATCTTCCCTTCCAAAAGGAAAAAGGCCAGGGAACCTGCAACAGTTTCC TCAGTCCCAGAAGATGTGCCCTCAGTCCCAGAAGCTGTGATGGCAGTCCCAGAAGCTGTGCCAGTCCAAGAATCTGAGCACTCGGTTCCATTGATAGGCA GAAGAAAGGAGAGATCTCTCTCTTCATTGGTAGTCAGCACACCTAAGATATCTGTCAAGTCTGTTCTGACAGGAAAAAGATCAAAATCTGTAGCTAGAAA ACGAGAATCTCCCATTCCTGTTGAGGAACAGATTAAGAAAATGGATGATTACTATGAGAGTTTAAGCTCTCCCGAGACTCTAAGAAAAATTGCACAAACT AAAAGGCAGGAAATTATTGTCCAAATAAAGAAGCTTGACGCCCAGGAGGAAGAAGCTCAAGCACTCAAAACCAGCATTAAGGAGCATGGTGATAAATCAA AAGTTATCGGTGCAGAATCTAACTCAACTTCATCACCTTCAGGTTCAGTGAAACCTAGAAGGCTGCAAGCCATGCGACAAAAAAGAGAGGGGTTTAATAT CCCAGCACAGGCTGCTGTTGATGCAAACAGTAAATGTGATAGAAGATTTAGTCCAATTTGGTTGTCATTAGTTGCTTCTGATGAGCAGGAAGGAGTTGCG CCCTTGCCACAGATATCTTCTTGCTACTTGAGGGTTAAGGATGGTAGTTTGCCTGTTTCACATATAAAGAAGTATCTTGTTCAGAAGCTGGGTCTTGTCA GTGAGGCTGAGGTGGATATCTTATTGCTTGGTCAGCCAGTGGCTTCAACGTTGCAGCTGCATAACTTGGTAGACTGGTGGTCTCAGACAGCTTCAGCATC TGAAAGAATACAGACAACCGTAGGCAGTTCAGCTAAAGATTTTGTAATGGTTCTCTCATATGGTCGTAAAGTCAGCCTCCAAAAACATCTTGCTACGGCG GCAGAATTCCATCTCTTGCAACAGTGA
AA sequence Show only first row Show all	>Potri.008G161500.2 pacid=42805799 polypeptide=Potri.008G161500.2.p locus=Potri.008G161500 ID=Potri.008G161500.2.v4.1 annot-version=v4.1 MMLGQVVKVQKERIAACMTCPLCNKLFREATTISECLHTFCRKCIYMKITDEELDSCPVCDIKLGCSPLEKLRADHSLQDLRARIFPSKRKKAREPATVS SVPEDVPSVPEAVMAVPEAVPVQESEHSVPLIGRRKERSLSSLVVSTPKISVKSVLTGKRSKSVARKRESPIPVEEQIKKMDDYYESLSSPETLRKIAQT KRQEIIVQIKKLDAQEEEAQALKTSIKEHGDKSKVIGAESNSTSSPSGSVKPRRLQAMRQKREGFNIPAQAAVDANSKCDRRFSPIWLSLVASDEQEGVA PLPQISSCYLRVKDGSLPVSHIKKYLVQKLGLVSEAEVDILLLGQPVASTLQLHNLVDWWSQTASASERIQTTVGSSAKDFVMVLSYGRKVSLQKHLATA AEFHLLQQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30580		BMI1A, DRIP2	DREB2A-interacting protein 2 (...		Potri.008G161500 [exp]	0	1
AT2G18290		EMB2783, APC10	EMBRYO DEFECTIVE 2783, anaphas...		Potri.005G121700 [exp]	6.08	0.5724
AT2G16030			S-adenosyl-L-methionine-depend...		Potri.019G125300 [exp]	21.90	0.5354
AT3G07360		ATPUB9	ARABIDOPSIS THALIANA PLANT U-B...		Potri.013G052200 [exp]	26.11	0.5277
AT1G03760			Prefoldin chaperone subunit fa...		Potri.017G012500 [exp]	51.52	0.5326
AT2G28480			RNA-binding CRS1 / YhbY (CRM) ...		Potri.007G129600 [exp]	54.69	0.5085
AT2G39500			unknown protein		Potri.008G051100 [exp]	72.41	0.5118
AT3G08000			RNA-binding (RRM/RBD/RNP motif...		Potri.002G225700 [exp]	76.68	0.4895
AT2G06010		ORG4	OBP3-responsive gene 4 (.1)		Potri.006G142000 [exp]	92.87	0.4532
AT3G13340			Transducin/WD40 repeat-like su...		Potri.006G000500 [exp]	95.74	0.4421
					Potri.001G305200 [exp]	113.96	0.4276

Compare expression of checked genes

Potri.008G161500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.