Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23740 408 / 9e-143 AOR alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) AT4G21580 91 / 9e-21 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3) AT3G15090 75 / 6e-15 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT4G13010 72 / 3e-14 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) AT1G49670 56 / 2e-08 NQR ARP protein (REF) (.1), ARP protein (REF) (.2) AT3G45770 51 / 4e-07 Polyketide synthase, enoylreductase family protein (.1.2) AT3G56460 49 / 3e-06 GroES-like zinc-binding alcohol dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G136100 [exp] 426 / 5e-150 AT1G23740 504 / 9e-180 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G342800 [exp] 92 / 3e-21 AT4G13010 513 / 0.0 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G342900 [exp] 87 / 2e-19 AT4G13010 484 / 2e-173 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G391100 [exp] 80 / 7e-17 AT4G13010 469 / 8e-168 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.004G036100 [exp] 78 / 3e-16 AT4G21580 525 / 0.0 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3) Potri.001G452600 [exp] 76 / 3e-15 AT4G13010 469 / 1e-167 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G343000 [exp] 73 / 1e-14 AT4G13010 369 / 2e-129 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G373200 [exp] 72 / 4e-14 AT3G15090 515 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Potri.019G065700 [exp] 62 / 1e-10 AT3G56460 525 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030615 [exp] 419 / 7e-147 AT1G23740 519 / 0.0 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10030873 [exp] 408 / 2e-142 AT1G23740 519 / 0.0 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10003159 [exp] 91 / 5e-20 AT4G13010 449 / 4e-158 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10002347 [exp] 88 / 1e-19 AT4G13010 468 / 8e-167 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10003158 [exp] 89 / 2e-19 AT4G13010 473 / 4e-168 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10038206 [exp] 82 / 1e-17 AT4G13010 451 / 3e-160 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10025898 [exp] 82 / 2e-17 AT4G13010 446 / 1e-158 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10002346 [exp] 80 / 2e-17 AT4G13010 265 / 3e-89 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10003495 [exp] 81 / 4e-17 AT3G15090 528 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10011233 [exp] 77 / 2e-15 AT4G21580 502 / 1e-180 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0296 [poplar] [flax] GroES PF08240 [poplar] [flax] ADH_N Alcohol dehydrogenase GroES-like domain CL0063 [poplar] [flax] NADP_Rossmann PF13602 [poplar] [flax] ADH_zinc_N_2 Zinc-binding dehydrogenase
Representative CDS sequence Show only first row Show all	>Potri.008G161600.1 pacid=42808639 polypeptide=Potri.008G161600.1.p locus=Potri.008G161600 ID=Potri.008G161600.1.v4.1 annot-version=v4.1 ATGGAGATCCCATCGAGTACTTCCATTCCGTCTAAAATGAAGGCTTGGGTCTATGGTGAATATGGGAACGTTTCCAATGTCTTAAAATTAGACTCGAACG TTACAGTTCCTCAAGTGAAAGAAGATCAGGTTCTGATCAAGGTTGTTGCTGCATCCATTAATCCAGTTGATGCTAAAAGGATGCTTGGCATGTTCAAAGT CAGTGACTCTCCTGTGCCGACTGTTCCGGGCTATGATGTGGCTGGTGTGGTGGTTAAGGTTGGAAGCCAAGTTAAAAGGCTGAAGGTAGGAGATGAAGTA TACGGAGACATCAATGAGAAGGCTCTGGACCACCCCAAACGATTTGGCTCTTTAGCCGAGTACACTGCTGTTGAAGAGAATCTAGTGGCTCTTAAGCCCA AAAATCTGAGTTTTGCTGAAGCAGCCAGCCTGCCCCTTGTCATTGAAACCGCTCATGAAGGTCTTGAAAGAACTGGGTTCTCTGCGGGCAAATCTATCCT TGTTTTAGGAGGTGCTGGTGGAGTTGGTACCCAAATAATTCAGCTAGCAAAGCATGTTTTTGGTGCATCTACAGTAGCAGCCACCTCTAGCACATCAAAA TTGGAGTTGCTGAAAAGCTTAGGAGCAGATTTGGCTATTGATTACACCAAGGAAAACTTTGAGGACCTGCCAGAGAAGTTTGATGTAGTATATGATGCAG TTGGGCAGTGTGACAGGGCAGTCAAGGCAGTGAAAGAAGATGGAAGTGTTGTGACAATAGTTGGTCCTATAACTCCCCCGGCTTTGATATTCGTGCTCAC TTCTAATGGCTCTGTCTTGGACAAACTGAAGCCTTACTTGGAGAGTGGAAAGGTGAAGCCGGTGCTAGATCCCAAGGGTCCATTCCCATTTTCTCAAACT GCAGAGGCATTTTCCTATCTTGAAACCAGCAGAGCTGTTGGAAAAGTGGTCATTTATCCGATCCCATGA
AA sequence Show only first row Show all	>Potri.008G161600.1 pacid=42808639 polypeptide=Potri.008G161600.1.p locus=Potri.008G161600 ID=Potri.008G161600.1.v4.1 annot-version=v4.1 MEIPSSTSIPSKMKAWVYGEYGNVSNVLKLDSNVTVPQVKEDQVLIKVVAASINPVDAKRMLGMFKVSDSPVPTVPGYDVAGVVVKVGSQVKRLKVGDEV YGDINEKALDHPKRFGSLAEYTAVEENLVALKPKNLSFAEAASLPLVIETAHEGLERTGFSAGKSILVLGGAGGVGTQIIQLAKHVFGASTVAATSSTSK LELLKSLGADLAIDYTKENFEDLPEKFDVVYDAVGQCDRAVKAVKEDGSVVTIVGPITPPALIFVLTSNGSVLDKLKPYLESGKVKPVLDPKGPFPFSQT AEAFSYLETSRAVGKVVIYPIP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G23740		AOR	alkenal/one oxidoreductase, Ox...		Potri.008G161600 [exp]	0	1
AT2G21940		ATSK1	shikimate kinase 1 (.1.2.3.4.5...		Potri.005G084600 [exp]	4.69	0.8276	SK2
					Potri.003G038525 [exp]	8.48	0.8266
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Potri.003G218900 [exp]	15.23	0.8082
AT4G30420			nodulin MtN21 /EamA-like trans...		Potri.006G177600 [exp]	15.39	0.8254
AT4G15920		SWEET17, AtSWEE...	Nodulin MtN3 family protein (....		Potri.013G013800 [exp]	16.97	0.7989
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.008G180400 [exp]	17.83	0.8131
AT1G19530			unknown protein		Potri.002G034500 [exp]	19.97	0.8122
AT2G44080		ARL	ARGOS-like (.1)		Potri.017G001400 [exp]	21.33	0.7648
AT2G41475			Embryo-specific protein 3, (AT...		Potri.006G069800 [exp]	21.81	0.7160
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Potri.016G046200 [exp]	22.80	0.8017	FAD2.3

Compare expression of checked genes

Potri.008G161600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.