Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14660 293 / 7e-103 NRPE7 RNA polymerase Rpb7-like, N-terminal domain (.1) AT3G22900 225 / 3e-76 NRPD7 RNA polymerase Rpb7-like, N-terminal domain (.1) AT4G14520 110 / 2e-30 DNA-directed RNA polymerase II-related (.1.2.3) AT5G59180 74 / 1e-16 NRPB7 DNA-directed RNA polymerase II (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G077300 [exp] 342 / 2e-122 AT4G14660 261 / 3e-90 RNA polymerase Rpb7-like, N-terminal domain (.1) Potri.010G077200 [exp] 189 / 7e-62 AT4G14660 171 / 1e-54 RNA polymerase Rpb7-like, N-terminal domain (.1) Potri.001G377200 [exp] 79 / 1e-18 AT5G59180 340 / 1e-121 DNA-directed RNA polymerase II (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023619 [exp] 290 / 1e-101 AT4G14660 266 / 2e-92 RNA polymerase Rpb7-like, N-terminal domain (.1) Lus10024250 [exp] 285 / 8e-100 AT4G14660 263 / 5e-91 RNA polymerase Rpb7-like, N-terminal domain (.1) Lus10023620 [exp] 231 / 1e-78 AT4G14660 205 / 3e-68 RNA polymerase Rpb7-like, N-terminal domain (.1) Lus10024251 [exp] 129 / 3e-39 AT4G14660 117 / 1e-34 RNA polymerase Rpb7-like, N-terminal domain (.1) Lus10001559 [exp] 77 / 5e-18 AT5G59180 331 / 5e-118 DNA-directed RNA polymerase II (.1) Lus10004986 [exp] 77 / 7e-18 AT5G59180 325 / 2e-115 DNA-directed RNA polymerase II (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0319 [poplar] [flax] SHS2 PF03876 [poplar] [flax] SHS2_Rpb7-N SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397
Representative CDS sequence Show only first row Show all	>Potri.008G161700.2 pacid=42807006 polypeptide=Potri.008G161700.2.p locus=Potri.008G161700 ID=Potri.008G161700.2.v4.1 annot-version=v4.1 ATGTTTCTCAAAGTGCAGTTGCCCTGGAATGTCATAATACCTGCTGAGAACTTGGATGCCAAAGGACTAATGCTCCAAAGGTCAATTGTTGTCCGCCTTT TAGATGACTTTGCAAAAAAACGGGCCACCAAAGATCTCGGATACTATCTTGCTGTCTCGACTTTGGAGAGCATAGGGGAGGGAAAAGTCAGGCAGCACAC AGGGGATGTGCTATTTCCTGTTGTCTTCAGTGGTATCACCTTCAAGATTTTCAGGGGGGAGATCTTAGACGGGATTGTTCACAAGGTGCTTAAGCATGGG GTTCTCTTGAGATGTGGGCCAATTGAGAATATCTACCTCTCTTGTATGAAAATGCCTGATTACCGCTATGTGCCTGGAGAGAATCCAGTATTCTTGAATG ACAAGACATCAAAGATTGAAAAGGATGTGGTGGTTCGTTTTGTTGTGCTTGGAACAAAGTGGCTAGAGGCAGAGAGGGAATTCCAGGCTTTGGTCAGTTT AGAGGGCGATTATCTTGGACCGGTGTCTTAA
AA sequence Show only first row Show all	>Potri.008G161700.2 pacid=42807006 polypeptide=Potri.008G161700.2.p locus=Potri.008G161700 ID=Potri.008G161700.2.v4.1 annot-version=v4.1 MFLKVQLPWNVIIPAENLDAKGLMLQRSIVVRLLDDFAKKRATKDLGYYLAVSTLESIGEGKVRQHTGDVLFPVVFSGITFKIFRGEILDGIVHKVLKHG VLLRCGPIENIYLSCMKMPDYRYVPGENPVFLNDKTSKIEKDVVVRFVVLGTKWLEAEREFQALVSLEGDYLGPVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14660		NRPE7	RNA polymerase Rpb7-like, N-te...		Potri.008G161700 [exp]	0	1
AT5G49610			F-box family protein (.1)		Potri.007G027300 [exp]	3.74	0.6301
AT4G24210		SLY1	SLEEPY1, F-box family protein ...		Potri.002G122300 [exp]	8.94	0.5946
AT2G03890		UBDKGAMMA7, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Potri.008G112200 [exp]	13.07	0.6177
AT1G76980			unknown protein		Potri.002G075400 [exp]	20.97	0.5765
AT2G17970			2-oxoglutarate (2OG) and Fe(II...		Potri.007G012200 [exp]	26.98	0.5875
AT1G08290	C2H2ZnF	WIP3	WIP domain protein 3 (.1)		Potri.009G143700 [exp]	28.77	0.5433
AT2G33120		ATVAMP722, SAR1	ARABIDOPSIS THALIANA VESICLE-A...		Potri.015G118300 [exp]	33.80	0.5773
AT4G29160		SNF7.1	SNF7 family protein (.1.2.3)		Potri.006G154000 [exp]	41.29	0.5318
AT1G24450		NFD2	NUCLEAR FUSION DEFECTIVE 2, Ri...		Potri.012G078400 [exp]	42.33	0.5356
AT1G18470			Transmembrane Fragile-X-F-asso...		Potri.015G050300 [exp]	42.95	0.5603

Compare expression of checked genes

Potri.008G161700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.