Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43650 123 / 2e-34 bHLH BHLH92, bHLH092 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G56960 50 / 3e-07 bHLH bHLH041 basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT2G28160 42 / 0.0002 bHLH ATFIT1, ATBHLH29, bHLH029, FIT1, ATBHLH029, FRU ARABIDOPSIS FE-DEFICIENCY INDUCED TRANSCRIPTION FACTOR 1, BASIC HELIX-LOOP-HELIX PROTEIN 29, FER-like regulator of iron uptake (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G077000 [exp] 274 / 6e-94 AT5G43650 117 / 2e-32 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.006G148800 [exp] 50 / 3e-07 AT5G56960 204 / 4e-59 basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.009G005600 [exp] 42 / 0.0001 AT2G28160 236 / 8e-76 ARABIDOPSIS FE-DEFICIENCY INDUCED TRANSCRIPTION FACTOR 1, BASIC HELIX-LOOP-HELIX PROTEIN 29, FER-like regulator of iron uptake (.1) Potri.002G105300 [exp] 41 / 0.0003 AT3G56770 110 / 1e-29 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008804 [exp] 88 / 1e-21 AT5G43650 94 / 1e-23 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10022218 [exp] 81 / 2e-17 AT5G09690 513 / 1e-179 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, magnesium transporter 7 (.1.2.3.4)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G161800.3 pacid=42808487 polypeptide=Potri.008G161800.3.p locus=Potri.008G161800 ID=Potri.008G161800.3.v4.1 annot-version=v4.1 ATGGATCATTTCTTTCAACAGCAATTCCTGCAAGGTGATGTCTTCTGCTATGCGAATGGTCCTGTAAATCAAAGTGCTTTTGTGCCATATATATGCAGAC CTTGGGGTGGAAGCGAAGTTGGGGTAGGGAGTTCTTCTATGGGGGTATATCCTACTAACATGAACAGAAGAATGATAGAATTCATGAGGAGAAGTTTCAC GGTAAAGATTGAAACTCAAGAACCTGATAGCAAACGATGTTATCGTCATAAGATGAGTGAGAGATTGAGGAGACAGAGGGAGAGAAATGGTTACTTGGCT CTGCATTCTTTGTTACCCCATGACACCAAGAAAGATAAGAACTCGATTATGCTAATGGCAGCAAAGAAGATTCAAGAGCTGGAGATGTACAAGGAGATGT TGAAGAGGAGAAATGATGAGATTGAAGAGAGATTGGCAGCAAGTGGAATCAGAAATGTTGAGAGTACAAAGATTAGAATTGAAGTAGCCAATCCAACATC AGGGGTGGATCCTATGATAGATGTTCTCAAGTGCTTGAAGAGTTTGGGAACAAAAACCAGAAGCATTCAATCACAGTTTTCTGATCAGGAACTTGTGGCA GTAATGGAAATTGAAACTAAGATTGAAGCTGCTGAGATAGAAAATGCGGTGAAAAGGACACTAGCATGA
AA sequence Show only first row Show all	>Potri.008G161800.3 pacid=42808487 polypeptide=Potri.008G161800.3.p locus=Potri.008G161800 ID=Potri.008G161800.3.v4.1 annot-version=v4.1 MDHFFQQQFLQGDVFCYANGPVNQSAFVPYICRPWGGSEVGVGSSSMGVYPTNMNRRMIEFMRRSFTVKIETQEPDSKRCYRHKMSERLRRQRERNGYLA LHSLLPHDTKKDKNSIMLMAAKKIQELEMYKEMLKRRNDEIEERLAASGIRNVESTKIRIEVANPTSGVDPMIDVLKCLKSLGTKTRSIQSQFSDQELVA VMEIETKIEAAEIENAVKRTLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G43650	bHLH	BHLH92, bHLH092	basic helix-loop-helix (bHLH) ...		Potri.008G161800 [exp]	0	1
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Potri.011G154600 [exp]	6.92	0.8102
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Potri.016G089000 [exp]	7.74	0.8391
AT4G20325			unknown protein		Potri.006G280600 [exp]	10.95	0.8505
AT1G79870			D-isomer specific 2-hydroxyaci...		Potri.013G046150 [exp]	12.00	0.8302
AT3G61800			unknown protein		Potri.014G099300 [exp]	12.12	0.8246
					Potri.001G407500 [exp]	13.49	0.8064
AT3G03700			Plasma-membrane choline transp...		Potri.013G066100 [exp]	16.61	0.7602
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Potri.008G042300 [exp]	17.83	0.8254
AT4G28880		CKL3	casein kinase I-like 3 (.1)		Potri.018G041000 [exp]	19.05	0.8124
AT5G07900			Mitochondrial transcription te...		Potri.011G005100 [exp]	21.00	0.8222

Compare expression of checked genes

Potri.008G161800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.