Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04280 550 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G30630 544 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G06750 536 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G162400 [exp] 814 / 0 AT1G04280 491 / 4e-170 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G220000 [exp] 560 / 0 AT1G06750 803 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G043000 [exp] 548 / 0 AT1G06750 777 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033855 [exp] 547 / 0 AT2G30630 804 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10014744 [exp] 529 / 0 AT2G30630 793 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10041167 [exp] 521 / 0 AT2G30630 524 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10021226 [exp] 424 / 5e-146 AT1G04280 445 / 2e-154 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10021885 [exp] 424 / 8e-145 AT2G30630 442 / 7e-152 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10022217 [exp] 383 / 1e-130 AT1G04280 416 / 2e-143 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10021884 [exp] 220 / 2e-67 AT2G30630 224 / 2e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10021225 [exp] 62 / 2e-10 AT1G06750 66 / 3e-12 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF06414 [poplar] [flax] Zeta_toxin Zeta toxin
Representative CDS sequence Show only first row Show all	>Potri.008G162000.1 pacid=42808499 polypeptide=Potri.008G162000.1.p locus=Potri.008G162000 ID=Potri.008G162000.1.v4.1 annot-version=v4.1 ATGCAGCCAGATAATAATAGCGGCCATGCCAAGGTCATTTTGACACGAGTTCTTGCCGCTTCGTTACTGGGTTTCATCAGTACTGCTGCCACAACTCTCT ACTATCGGAGAAAATCAAAGGCTAAAATAGACCAGCACATCATTCCAGGCTTAGTCAGGACAGAATCTGGCCGTTTGGGAAATCTTGAAAGATTCTCCGA TTATGTTGCTAGGCAGATGGGATTTGTAGATGCAGATGAGTGTCCACGGCTATGCAAATTGGCTTATGATTATCTGAAAAGATCTGAAGGGTGTGAGAAT AACATCTATGATTTTTTTGCTAATCTACCTGAGTTTGAATCTCTGTACGTGAAGCTGATGGAGGAATTTGAAAAATGCATCCTCACTTATTTCGCATTCC ATTGGAGCAGAGCATCTCTGTTTATCAGTCAGGTTATAGATGTTGAATCCGTGAAGAAACCAAAGCTCAAAGGCATTGTAATGGCTGCCACAAGAAAACA AAGATTTGAGAGGGTGACCAAGAACTTGAAGGTTACAAGGGCATTTTCTACTATAGTTGAGGAATTGAAAGCAATCGGCCAGGGGGAATCACATTGTACG GAGGTCATGGTGCCTGTGGCACTGAGTGAGAGAAGTCCGGTGCTGCTGCTTATGGGTGGTGGTATGGGGGCTGGCAAGAGCACTGTCACCAAAGATATTC TCAAAGAACCGTTCTGGTCAGGAGCAAAGGCAAAGGCGGTTGTGGTAGAGGCTGATGCATTCAAAGAGTCGGATGTCATCTACAGAGCCATTAGCTACAT GGGCCATCACGATGACATGCTTCAAACTGCTGAACTGGTGCACCAATCATCAACCGATGCTGCATCATCACTCCTAGTAACTGCACTGAATGAAGGACGG GATGTGATCATGGATGGCACCCTTTCATGGGAGCCTTTTGTGGAGCAAACAATTGCCATGGCTCGTAATGTGCACACGTGTCGTTACCGAATGGGACCAG GGTACCAGGTTGCTGAGGATGGGACCGTCGATGAAAATTACTGGGAAAAGGTAGAGCAAGAGGAAGAAGACCAGCGATTAAACAACGAGAAAGGAGAATT GACTGGCAGGAAACCATACAGAATAGAGCTGGTTGGAGTTGTCTGTGACCCCTACCTAGCTGTTGTTAGGGGCATCAGGAGAGCCATAACGACAAGAAGG GCAGTGAGGGTGAATTCCCAGTTAAAGTCCCACAAGAGATTCGCCAGCGCATTTGAAAGATACTGCCAACTTGTTGATAATGCCAGGCTTTATTGCACCA ATTCAGTGGGAGCACCGCCTAGTCTGATAGCATGGAAAGATGGGGACAACAAGCTCCTGATTGATCCAGAGGGGTACAAATGCTTGACAAATGCAAGCAA TTTGAGGGCTGATGCAGAGTCCATCTACGAGCTTTACACAGACCCAAGCCCCATTTTCAAGCCGGGCTCTGTTTGGAAAGACATCGTCTTGGATCCTTCC AGGCCCACTGTTCAATCGGAGCTCAAAACCTCTATTCTAAACATCGAAAAATCATGA
AA sequence Show only first row Show all	>Potri.008G162000.1 pacid=42808499 polypeptide=Potri.008G162000.1.p locus=Potri.008G162000 ID=Potri.008G162000.1.v4.1 annot-version=v4.1 MQPDNNSGHAKVILTRVLAASLLGFISTAATTLYYRRKSKAKIDQHIIPGLVRTESGRLGNLERFSDYVARQMGFVDADECPRLCKLAYDYLKRSEGCEN NIYDFFANLPEFESLYVKLMEEFEKCILTYFAFHWSRASLFISQVIDVESVKKPKLKGIVMAATRKQRFERVTKNLKVTRAFSTIVEELKAIGQGESHCT EVMVPVALSERSPVLLLMGGGMGAGKSTVTKDILKEPFWSGAKAKAVVVEADAFKESDVIYRAISYMGHHDDMLQTAELVHQSSTDAASSLLVTALNEGR DVIMDGTLSWEPFVEQTIAMARNVHTCRYRMGPGYQVAEDGTVDENYWEKVEQEEEDQRLNNEKGELTGRKPYRIELVGVVCDPYLAVVRGIRRAITTRR AVRVNSQLKSHKRFASAFERYCQLVDNARLYCTNSVGAPPSLIAWKDGDNKLLIDPEGYKCLTNASNLRADAESIYELYTDPSPIFKPGSVWKDIVLDPS RPTVQSELKTSILNIEKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04280			P-loop containing nucleoside t...		Potri.008G162000 [exp]	0	1
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Potri.003G072800 [exp]	1.41	0.9031	Pt-PE3.4
AT3G44735		PSK1, ATPSK3	PHYTOSULFOKINE 3 PRECURSOR (.1...		Potri.004G188200 [exp]	4.24	0.8965	PSK6.2
AT5G08240			unknown protein		Potri.005G092400 [exp]	6.32	0.8882
AT3G61550			RING/U-box superfamily protein...		Potri.014G091000 [exp]	6.92	0.8521
AT3G14470			NB-ARC domain-containing disea...		Potri.017G143820 [exp]	8.94	0.8758
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Potri.016G020800 [exp]	12.00	0.8496
AT2G22590			UDP-Glycosyltransferase superf...		Potri.012G034100 [exp]	17.74	0.8716
AT3G14470			NB-ARC domain-containing disea...		Potri.017G143433 [exp]	19.39	0.8719
AT3G02875		ILR1	IAA-LEUCINE RESISTANT 1, Pepti...		Potri.006G207300 [exp]	20.00	0.8397	ILR1.1
					Potri.006G256900 [exp]	22.24	0.8552

Compare expression of checked genes

Potri.008G162000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.