Plant FIBer expression Database

Potri.008G162150 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G43630 192 / 9e-51 TZP zinc knuckle (CCHC-type) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G162500
[exp]
1436 / 0 AT5G43630 237 / 3e-65 zinc knuckle (CCHC-type) family protein (.1)
Potri.010G076700
[exp]
1049 / 0 AT5G43630 234 / 2e-64 zinc knuckle (CCHC-type) family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021224
[exp]
383 / 1e-118 AT5G43630 342 / 1e-103 zinc knuckle (CCHC-type) family protein (.1)
Lus10022216
[exp]
348 / 5e-109 AT5G43630 234 / 3e-67 zinc knuckle (CCHC-type) family protein (.1)
PFAM info
Representative CDS sequence
>Potri.008G162150.1 pacid=42807301 polypeptide=Potri.008G162150.1.p locus=Potri.008G162150 ID=Potri.008G162150.1.v4.1 annot-version=v4.1
ATGGAAAAAGAGAGAGACAATTATATGGAGACTGGTCCCTACATCTGTCCTCTAGAAAAACTGGAGTCAACAGCAGAGAATGATTTTAAAACTCCACATA
GTGAAAATGTGTGTGATGTGGCAACTGAGATTGTAGGATCACAAAATGCCAAGGAAGTCCGGAGTAGCTCTCAGCAGGATGATGAGATACTTCCTAAAGA
CAATGATTGTGCCATTAAACAGTCTCCCACATACAGCAGAACCCGGAGGTATCAAATGAAAGGCAAGGCTAAGGCTTTATCTGATGGAAATTTAAATGAA
AGAATGCTGGACATGGATGATGACAGCCATGAAAGTGTTGAAAGTTGCAACAGTGTTGGGTTATTTTCTACTGGCAAAAGGCAACGGAACCTTGATCCAC
ATTCGTATGTTGGGAGAAAAAGCATAACTCCAACAAATTGGATCTCAAACATGATGAAGGGGTTCTTAAAATCAAATGAAGATGAGGCACCGTCTCTTGC
TCTTACCCTCGCAAATCACAAGCATGGACATGAGGATCGTGATAAGAATCTCATTTCATGTAACAGAAATCAAGATAAAGGGTGCAAAACTATAGGATTT
CATTCGCTTTTTCAGTCATTGTATTGTCCCAAGACAAAGGCTCAAGAAACTGTCGCTTTGAATGCCAATACTCAAACTGAAGTATCTAAAGAACTTGGGC
TCGACAACAAGATCTGTGACTCTAATGCTACTCCAATACCCTGTCGTATGGTGACTGACAATGTGTACAGACGGTTTCTTCAACCAAATGAGAAGTTAAA
TGAGTCGACATCTGGAAATGGTGCAGCTTCACCAGCCTTGACCAAACTTTTATCCACCAATATTGCTTCTAGTCAGGAGATCAGCGGGAGTAACTCTGCA
GAGAAAAAAAATTCATGCAACATGGCAACTGATAAGGAGAAAAATGGGACAAGCTCCAATTCCTCTCCGGGTAAACGTAAGATGAACGATGCTGAACAGC
CATCTGAAGGCAAGGCCACAAATACTTCCGGGTACAGAAGTGACCCACTCACAAGCTTGTGGATAACTCGGCTTTCTCCAAAAACTTCTGGTCCATTGTC
GAACCGGGATCTTTGCCACAGAAGAACTGGCGAAGCTCTTGATGGCTTTACCGATTTCATAAGGCTGAAGGCTCAGTGGCAGAATCATCCTTCTTCTTAC
CAAGATAAAAACATTGTGGGGGCTAGGGAGGAGGAGCACTTCACTGAGGACCCGGTATGCATGCATAATTGTGCCAACAGTACTGAAGTTTCATTTAGCA
TAAATAAAGTAAATGGACACCATGATGAGAAGTCCATGTGTAAAATGAACTCTACCTTGCCTTTTTCAAGATTCAGAAATTCAGAGGCGATGGCTTCTGT
CTTTGCAAGGAGATTGGATGCCCTCATGCACATCATGCCATCATACGGGACAGATGATTCTTCTCATGGAAACCTGACATGTTTCTTTTGTGGCATAAAA
TGTCACCATGTGCGAGATTGTCCAGAGATAATAGATAGTGAGCTTGCAGATATTCTAAGAAATGCTAATTCATTTAACGGAGCAAACGAATTTCCATGTG
TGTGCATAAGATGTTTCCAGTCAAATCACTGGGCTGTTGCATGTCCTAGTGCCTCTTCAAGAACAAGACATCAAGCAGAATATGGCGCTTCTCTGGTCCA
TGAATCCAGCCCTTGTAAAATTCTTCTCAATCCAAGAAATGAAGACGATGCAAAGCAGTCAGATGGCAAGGATAGTCAATTGCAAGCTGCTGATGCACCT
ACAGTTCGCAATGGGAAATTGCATGAAGCTTCTGCCTCTGGGAAAATAAATATGAATATGAAACCGTTTGAGAGAGACACTGCTTCAAGTTCTGGGGAAA
AGAAGTTGAAAGAAAACCAGGTCATGCCTTTGAGCAATTTTATCAATAGCCAGATAGCGGACGTACCGAAGGGAATTTTTGATGCAGTAAAAAGGCTTCG
TTTATCTCGAACAATTATTCTCAAAAAATCTAATAAACTTCTGGTAAGGGCATTAAAGCCTCATTTTCCTAAATATGAACCTAGTATGACAGATTTGAAC
CAGAAAATTCGTGAGCTGGTAATTTTGAAATGCATTGGCTTGAACATCTGGCTTAATATTGGTCTGTCCATGCTTATTCTATCAAATCATCTTCTGCTAC
TTTATCCTCATATTACTTTGGCTCATGATTTTGGCATTTTTCTCCCCCTCGAAGTCAGTTCTTTTCAATTTTGCTTTTGCATATCTTACAACCTTTGTTT
CTGCAACATGTGGGAACAGGGACTGGGGGGAACTGGGTATTATGTTGCCTGCATTACTGGAGTTCAAAGTCAGAGTTCAAAACAAAAGTTCAAAAATTCT
ATTGCTGTAATTGTAGGTGGCGTCAAATGTTTAGTTGAGAGTCAATATATCTCCAACCACGACTTCACCGAGCTAATGGCATGGTGGTGTGCAACCTTGA
AGGATGGTGGCAAGACACCCTCCGAAGAAGATTTAAGATTGAAAATTGAAGAGATGAAAATGTTACGGTTTTAG
AA sequence
>Potri.008G162150.1 pacid=42807301 polypeptide=Potri.008G162150.1.p locus=Potri.008G162150 ID=Potri.008G162150.1.v4.1 annot-version=v4.1
MEKERDNYMETGPYICPLEKLESTAENDFKTPHSENVCDVATEIVGSQNAKEVRSSSQQDDEILPKDNDCAIKQSPTYSRTRRYQMKGKAKALSDGNLNE
RMLDMDDDSHESVESCNSVGLFSTGKRQRNLDPHSYVGRKSITPTNWISNMMKGFLKSNEDEAPSLALTLANHKHGHEDRDKNLISCNRNQDKGCKTIGF
HSLFQSLYCPKTKAQETVALNANTQTEVSKELGLDNKICDSNATPIPCRMVTDNVYRRFLQPNEKLNESTSGNGAASPALTKLLSTNIASSQEISGSNSA
EKKNSCNMATDKEKNGTSSNSSPGKRKMNDAEQPSEGKATNTSGYRSDPLTSLWITRLSPKTSGPLSNRDLCHRRTGEALDGFTDFIRLKAQWQNHPSSY
QDKNIVGAREEEHFTEDPVCMHNCANSTEVSFSINKVNGHHDEKSMCKMNSTLPFSRFRNSEAMASVFARRLDALMHIMPSYGTDDSSHGNLTCFFCGIK
CHHVRDCPEIIDSELADILRNANSFNGANEFPCVCIRCFQSNHWAVACPSASSRTRHQAEYGASLVHESSPCKILLNPRNEDDAKQSDGKDSQLQAADAP
TVRNGKLHEASASGKINMNMKPFERDTASSSGEKKLKENQVMPLSNFINSQIADVPKGIFDAVKRLRLSRTIILKKSNKLLVRALKPHFPKYEPSMTDLN
QKIRELVILKCIGLNIWLNIGLSMLILSNHLLLLYPHITLAHDFGIFLPLEVSSFQFCFCISYNLCFCNMWEQGLGGTGYYVACITGVQSQSSKQKFKNS
IAVIVGGVKCLVESQYISNHDFTELMAWWCATLKDGGKTPSEEDLRLKIEEMKMLRF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G43630 TZP zinc knuckle (CCHC-type) famil... Potri.008G162150
[exp]
0 1
AT5G43630 TZP zinc knuckle (CCHC-type) famil... Potri.010G076700
[exp]
2.44 0.9024
AT5G15140 Galactose mutarotase-like supe... Potri.017G080000
[exp]
2.44 0.9389
AT5G24930 CO COL4, ATCOL4 CONSTANS-like 4 (.1) Potri.006G267700
[exp]
6.00 0.8882 Pt-COL1.1
AT4G00730 HD AHDP, ANL2 ANTHOCYANINLESS 2, ARABIDOPSIS... Potri.002G154700
[exp]
6.00 0.9173 Pt-ANL2.1
AT5G64330 JK218, RPT3, NP... ROOT PHOTOTROPISM 3, NON-PHOTO... Potri.017G048200
[exp]
6.32 0.8905
AT5G22390 Protein of unknown function (D... Potri.009G162800
[exp]
7.74 0.8829
Potri.005G099266
[exp]
10.09 0.8468
AT1G17650 GR2, GLYR2 glyoxylate reductase 2 (.1) Potri.003G036600
[exp]
10.48 0.8850
AT3G07120 RING/U-box superfamily protein... Potri.002G243800
[exp]
15.00 0.8260
AT5G40170 AtRLP54 receptor like protein 54 (.1) Potri.011G104700
[exp]
15.32 0.8410

Potri.008G162150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.