Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43630 338 / 3e-101 TZP zinc knuckle (CCHC-type) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G162150 [exp] 1415 / 0 AT5G43630 191 / 1e-50 zinc knuckle (CCHC-type) family protein (.1) Potri.010G076700 [exp] 1331 / 0 AT5G43630 234 / 2e-64 zinc knuckle (CCHC-type) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021224 [exp] 552 / 0 AT5G43630 342 / 1e-103 zinc knuckle (CCHC-type) family protein (.1) Lus10022216 [exp] 390 / 6e-123 AT5G43630 234 / 3e-67 zinc knuckle (CCHC-type) family protein (.1) Lus10022215 [exp] 64 / 2e-10 AT5G43630 42 / 4e-04 zinc knuckle (CCHC-type) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0511 [poplar] [flax] Retroviral_zf PF00098 [poplar] [flax] zf-CCHC Zinc knuckle CL0511 [poplar] [flax] PF03126 [poplar] [flax] Plus-3 Plus-3 domain
Representative CDS sequence Show only first row Show all	>Potri.008G162500.10 pacid=42807993 polypeptide=Potri.008G162500.10.p locus=Potri.008G162500 ID=Potri.008G162500.10.v4.1 annot-version=v4.1 ATGGATACAAATGATAAAAACATAGAACCTGTAATTGATTTAGGATTTTCCCTGGGTTATTCCAATCAGTGCATTCAGAGAAGATTGAAGAATGATTCAG GTGCAGGTGCAAATGCAGCTTCAAGTGTAGACATGACATTTGTGGCCACCAATGCCCTGTCTGAACTAGTTTGGTCTCCAAAGAAAGGTTTGAGTCTTAA ATGCGCCGATGGAACCTTCTCCAACCAAAAACCCTCTCTGTTACGGGGTGCAGGACCAAGTGATATGGTAAGTGGATCAAATGCTGACAAAGCTATCGGC AAAAAAGTTTTCATGACTCCTCCAGAAGAATCTGACGTGAGGAGTGAAGTTGCTGGAAGAGACAACCCCACAAAGTTCGTTACAAGTGATACAGGCCTAT TTCCGTTGTCAAGTGAATCAAGGCATAAAGTCAAAATAGCAACTGATGATCACAAGGAGGAAATGAAAACAGCAGTTGGGCTACCTTTTCTGCAGAAAAT GGAGGATGCAAGAAACAATAAAGCAGAAGATATTTATGATCCGATCAATCTTCAAGTAGATGAAATATCTAGGACCTGGGAAACCAAATTTCCAAGTTTG TCAGATGAAACGAAACTGGATGTGGCACAGAATGGCCCAACTTCCAAGGAACCTAATGTCAGGATTGGAGGTGTTGGTGATGCAAGTCACACATTACAGA CAGAAATTGTTTCGGCCTCGCAAGTTTGCTCTGTGGAAGAATGTGAATCTTATGACACTAATATGCAGAAAGCACCATTAGGAAGAGAACATTTTGAATC ACCTTCATGCATGGAAAAAGAGAGAGAGAATAATATGGGGACTGGTCCCTACATCTGTCCTCTGGAAAAACTGGAGTCAACTGCAGAGAATGATTTTAAA ACTCCACATAGTGAAAATGTGTGTGATGTGGCAACTGAGATTGTAGGATCACAAAATGCCAAGGAAGTCCGGAGTAGCTCTCAGCAGGATGATGAGATAC TTCCTAAAGACAATGATTGTGCCATTAAACAGTCTCCCACATACAGCAGAACCCGGAGGTATCAAATGAAAGGCAAGGCTAAGGCTTTATCTGATGGAAA TTTAAATGAAAGAATGCTGGACATGGATGATGACAGCCATGAAAGTGTTGAAAGTTGCAACAGTGTTGGGTTATTTTCTACTGGCAAAAGGCAACGGAAC TTTGATCCACATTCGTATGTTGGGAGCAAAAGTATCAAAACAAAAATTCAAGAAAGTCCCGGTTCCTCGTCATTTGTTAAACATGATGGTTCATTCATGA ATTGGATCTCAAACATGATGAAGGGGTTCTTAAAATCAAATGAAGATGAGGCACCTTCTCTTGCTCTTACCCTTGCAAATCTCAAGCATGGACATGAGGA TCGTGATAAGAATCTCATTTCATGTAACAGAAATCAAGATCAAGGGTGCAAAACTATGGGATTTCATTCGCTTTTTCAGTCATTGTATTGTCCCAAGACA AAGGCTCAAGAAACTGTCGCTTTGAATGCCAATACTCAAACGGAAGGATCTAAAGAACTTGGGCTGGACAACAAGATCTGTGACTCTAATGCTACTCCAA TAACCTGTCCTATGGTGACTGACAATGTGTACAAACGGTTTCTTCAACCAAATGAGAAGTTAAATGAGTCGACATCTGGAAATGGTACAGCTCCACCAGC CTTGACCAAACTTTTATCCACCAATATTGCTTCTGGTCAGGAGATCAGCGGGAGTAACTCTGCAGAGAAAAAAAATTCATGCAACATGGCAACTGATAAG GAGAAAGATGAGACAAGCTCCAATTCCTCTCGGGGTAAACGTAAGAGGAACGATGCTGAACAGCCATCTGAAGGCAAGGCCACAAATACTTCCGGGTACA GAAGTGACCCACTCACAAGCTTGTGGATAACTCGGCTTTCTCCAAAAACTTCTGGTCCATTGTCGAACCGGGATCTTTGCCACAGAAGAACTAGCGAAGC TCTTGATGGCTTTACCGATTTCATAAGGCTGAAGGCTCAGTGGCAGAATCATCCTTCTTCTTACCAAGACAAAAAAATTGTGGGGGCTAGGGAGGAGGAG CACTTCACTGAGGACCCGGTATGCATGCAAAATTGTGCCAACAGTACTGAAGTTTCATTTAGCATAAATAAAGTAAATGGACACCATGATGAGAAGTCCA TGTGTAAAGTGAACTCTACCTTGCCTTTTTCAAGATTCAGAAATTCAGAGGCGATGGCTTCTGTCTTTGCAAGGAGATTGGATGCCCTCAAGCACATCAT GCCATCATACGGGACAGATGATTCTTCTCATGGAAACCTGACATGTTTCTTTTGTGGCATAAAAGGTCACCATGTGCGAGATTGTCCAGAGATAATAGAT AGTGAGCTTGCAGATATTCTAAGAAATGCTAATTCATTTAACGGAGCAAACGAATTTCCCTGTGTGTGCATAAGATGTTTCCAGTCAAATCACTGGGCTG TTGCATGTCCTAGTGCCTCTTCAAGAACAAGACATCAAGCAGAATATGGCGCATCTCTGGTCCATGAATCCAGCCCTTGTAAAATTCTGCTCAATCCAAG AAATGAAGACGATGCAAAGCAGTCAGATGGCAAGGATAGTCAATTGCAAGCTGCTGATGCACCTACAGTTTGCAATGGGAAATTGCATGAAGCTTCTGCC TCTAGGAAAATGAATATGAATATGAAACCGTTTGAGAGAGACACTGCTTCAAGTTCTGGGGAAAAGAAGTTGAAAGAAAACCAGGTCATGCCTTTGAGCA TCAATAGCCAGATATTGGACGTACCCAAGGGAATTTTTGATGCAGTAAAAAGGCTTCGTTTATCTCGAACAATTATTCTCAAATGGATGAATTCCCATAC ACCACCATCACATCTTGATGGCTTTTTCCTGCGCTTGCGGCTTGGGAAGTGGGAACAGGGACTGGGGGGAACTGGGTATTATGTTGCCTGCATTACTGGA GTTCAAAGTCAGAGTTCAAAACAAAAGTTCAAAAATTCTATTGCTGTAATTGTAGGTGGCGTCAAATGTTTAGTTGAGAGTCAATATATCTCCAACCACG ACTTCACCGAGGGTGAGCTAGTGGCATGGTGGTGTGCAACCTTGAAGGATGGTGGCAAGACACCCTCCGAAGAAGATTTAAGATTGAAAGTTGAAGGGAT GAAAATGTTACGGTTTTAG
AA sequence Show only first row Show all	>Potri.008G162500.10 pacid=42807993 polypeptide=Potri.008G162500.10.p locus=Potri.008G162500 ID=Potri.008G162500.10.v4.1 annot-version=v4.1 MDTNDKNIEPVIDLGFSLGYSNQCIQRRLKNDSGAGANAASSVDMTFVATNALSELVWSPKKGLSLKCADGTFSNQKPSLLRGAGPSDMVSGSNADKAIG KKVFMTPPEESDVRSEVAGRDNPTKFVTSDTGLFPLSSESRHKVKIATDDHKEEMKTAVGLPFLQKMEDARNNKAEDIYDPINLQVDEISRTWETKFPSL SDETKLDVAQNGPTSKEPNVRIGGVGDASHTLQTEIVSASQVCSVEECESYDTNMQKAPLGREHFESPSCMEKERENNMGTGPYICPLEKLESTAENDFK TPHSENVCDVATEIVGSQNAKEVRSSSQQDDEILPKDNDCAIKQSPTYSRTRRYQMKGKAKALSDGNLNERMLDMDDDSHESVESCNSVGLFSTGKRQRN FDPHSYVGSKSIKTKIQESPGSSSFVKHDGSFMNWISNMMKGFLKSNEDEAPSLALTLANLKHGHEDRDKNLISCNRNQDQGCKTMGFHSLFQSLYCPKT KAQETVALNANTQTEGSKELGLDNKICDSNATPITCPMVTDNVYKRFLQPNEKLNESTSGNGTAPPALTKLLSTNIASGQEISGSNSAEKKNSCNMATDK EKDETSSNSSRGKRKRNDAEQPSEGKATNTSGYRSDPLTSLWITRLSPKTSGPLSNRDLCHRRTSEALDGFTDFIRLKAQWQNHPSSYQDKKIVGAREEE HFTEDPVCMQNCANSTEVSFSINKVNGHHDEKSMCKVNSTLPFSRFRNSEAMASVFARRLDALKHIMPSYGTDDSSHGNLTCFFCGIKGHHVRDCPEIID SELADILRNANSFNGANEFPCVCIRCFQSNHWAVACPSASSRTRHQAEYGASLVHESSPCKILLNPRNEDDAKQSDGKDSQLQAADAPTVCNGKLHEASA SRKMNMNMKPFERDTASSSGEKKLKENQVMPLSINSQILDVPKGIFDAVKRLRLSRTIILKWMNSHTPPSHLDGFFLRLRLGKWEQGLGGTGYYVACITG VQSQSSKQKFKNSIAVIVGGVKCLVESQYISNHDFTEGELVAWWCATLKDGGKTPSEEDLRLKVEGMKMLRF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G43630		TZP	zinc knuckle (CCHC-type) famil...		Potri.008G162500 [exp]	0	1
AT1G08465	YABBY	YAB2	YABBY2, Plant-specific transcr...		Potri.001G214700 [exp]	2.00	0.9557
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125351 [exp]	4.24	0.9534
AT3G06880			Transducin/WD40 repeat-like su...		Potri.015G117300 [exp]	4.89	0.9518
AT1G42550		PMI1	plastid movement impaired1 (.1...		Potri.005G255500 [exp]	14.49	0.9469
AT1G78995			unknown protein		Potri.007G003600 [exp]	15.32	0.9517
AT2G34960		CAT5	cationic amino acid transporte...		Potri.003G154600 [exp]	16.09	0.9226	CAT5.1
AT4G15545			unknown protein		Potri.010G027400 [exp]	17.88	0.9420
AT5G51110			Transcriptional coactivator/pt...		Potri.015G110500 [exp]	22.60	0.9439
AT1G18810			phytochrome kinase substrate-r...		Potri.015G062600 [exp]	23.91	0.9351
AT1G44446		ATCAO, CH1	CHLOROPHYLL A OXYGENASE, Pheop...		Potri.005G178300 [exp]	24.71	0.9194

Compare expression of checked genes

Potri.008G162500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.