Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04300 846 / 0 TRAF-like superfamily protein (.1.2.3.4) AT5G43560 628 / 0 TRAF-like superfamily protein (.1.2) AT5G52330 462 / 5e-153 TRAF-like superfamily protein (.1.2) AT4G16045 233 / 9e-68 TRAF-like superfamily protein (.1) AT3G11910 106 / 5e-23 AtUBP13, UBP13 ubiquitin-specific protease 13 (.1.2) AT5G06600 105 / 9e-23 AtUBP12, UBP12 ubiquitin-specific protease 12 (.1.2.3) AT3G58210 84 / 3e-17 TRAF-like family protein (.1) AT3G58250 80 / 1e-15 TRAF-like family protein (.1) AT1G69650 75 / 3e-14 TRAF-like family protein (.1) AT3G58220 74 / 1e-13 TRAF-like family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G075000 [exp] 1739 / 0 AT1G04300 855 / 0.0 TRAF-like superfamily protein (.1.2.3.4) Potri.008G012600 [exp] 111 / 1e-24 AT5G06600 1909 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.010G245100 [exp] 110 / 2e-24 AT5G06600 1907 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.016G064100 [exp] 110 / 3e-24 AT5G06600 1943 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.006G198300 [exp] 110 / 3e-24 AT5G06600 1954 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.001G130700 [exp] 76 / 2e-14 AT3G17380 244 / 2e-79 TRAF-like family protein (.1) Potri.018G025600 [exp] 74 / 5e-13 AT2G25320 2378 / 0.0 TRAF-like family protein (.1) Potri.006G256400 [exp] 73 / 1e-12 AT2G25320 2377 / 0.0 TRAF-like family protein (.1) Potri.003G103200 [exp] 71 / 1e-12 AT3G17380 251 / 2e-82 TRAF-like family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021218 [exp] 1161 / 0 AT1G04300 897 / 0.0 TRAF-like superfamily protein (.1.2.3.4) Lus10021216 [exp] 1083 / 0 AT1G04300 837 / 0.0 TRAF-like superfamily protein (.1.2.3.4) Lus10022207 [exp] 971 / 0 AT1G04300 722 / 0.0 TRAF-like superfamily protein (.1.2.3.4) Lus10022208 [exp] 649 / 0 AT1G04300 424 / 8e-134 TRAF-like superfamily protein (.1.2.3.4) Lus10008949 [exp] 112 / 1e-24 AT5G06600 1904 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10029309 [exp] 109 / 7e-24 AT5G06600 1957 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10043456 [exp] 107 / 3e-23 AT5G06600 1925 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10034130 [exp] 107 / 3e-23 AT3G11910 1888 / 0.0 ubiquitin-specific protease 13 (.1.2) Lus10025569 [exp] 98 / 4e-21 AT5G06600 149 / 7e-39 ubiquitin-specific protease 12 (.1.2.3) Lus10034129 [exp] 86 / 3e-18 AT5G06600 164 / 2e-46 ubiquitin-specific protease 12 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0389 [poplar] [flax] TRAF PF00917 [poplar] [flax] MATH MATH domain
Representative CDS sequence Show only first row Show all	>Potri.008G163300.3 pacid=42806108 polypeptide=Potri.008G163300.3.p locus=Potri.008G163300 ID=Potri.008G163300.3.v4.1 annot-version=v4.1 ATGGCTGGGATTGTGAGTGAGGAAGCTGGAGTTGGAAGGTCTACGGAGGGGATTTCAAGTGGACTGCGTTGCCAGTCAGGTGAAGCGTTGGCGGAATGGC GATCCTCTGAGCAGGTGGAAAATGGAACCCCATCAACTTCACCACCTTATTGGGACACTGATGATGACGATGATGGAGGGCCAAAACCTTCTGAGTTATA TGGAAGATATACATGGAAGATAGAGAAATTCTCACAGATTAATAAAAGAGAACTTAGAAGTAATGCATTTGAAGTTGGCGGCTACAAATGGTACATTTTA ATATACCCCCAAGGTTGTGACGTCTGCAATCATCTTTCATTATTTCTTTGTGTTGCCAACCATGATAAACTTCTTCCAGGTTGGAGTCATTTTGCACAGT TTACGATTGCTGTGGTGAATAAAGATCCAAAAAAATCAAAATATTCTGATACGTTACATCGGTTCTGGAAGAAAGAGCATGACTGGGGATGGAAGAAATT TATGGAATTATCTAAAGTGTCAGATGGGTTCTTAGATGCTGCTGACACTCTTATTATAAAGGCTCAAGTGCAAGTCATCAGGGAGAAAGCAGATCGGCCT TTTCGTTGCCTCGATTGCCAGTATAGGAGAGAACTTGTTAGGGTATATTTGACAAATGTAGAGCAGATTTGTCGGCGTTTTGTGGAAGAGAGACGGGGTA AACTTGGGAAGTTAATAGAGGACAAAAATAGGTGGTCAAGCTTTTGTGGTTTTTGGTTGGGAATGGATCAAAACACCCGGCGCCGCATGTCTAGGGAGAA AACAGATGTAATTCTGAAAGTAGTTGTCAAGCATTTCTTTATAGAGAAGGAAGTCACATCTACATTGGTAATGGATTCCCTGTATAGTGGATTGAAGGCT CTTGAAGGCCAATCTAAGAGCAAGAAGGGGAGAGCAAAGTTATTGGATGCTGAAGAAATGCCTGCTCCAATTGTCCGTGTTGAAAAAGATATGTTTGTGT TGGTGGATGATGTGCTGCTGCTACTTGAAAGGGCAGCCATTGAACCATTGCCTCCAAAAGACGAGAAGGGCCCTCAGAACCGCACAAAGGATGGAAGTTC TGGAGAGGACTTCAACAAGGATTCCATTGAGCGTGATGAAAGGCGTCTAACAGAATTGGGTCGTAGGACGGTGGAAATATTTGTCCTCGCTCATATTTTT AACCATAAAATTGAAGTTTCCTACCAGGAGGCTGTTGCTTTGAAGAGGCAAGAAGAGCTAATTCGTGAAGAAGAGGCAGCATGGCTTGCAGAAAGTGAGC AGAAGGCTAAACGTGGAGCAACTGAAAAGGAAAAGAAATTGAAGAAAAAACAGGCTAAACAAAAACGGAACAATCGCAAAGGGAAGGATAAAGGGAGAGA TGATAGGTCTAGTGTGGCCGTGGTAGACAATCACCAAGAGACAAATACTAGTAATGAGAAAAAGGAGTATGTTGTGGAGGAGGTGAAGCCTGTGGTGGAA AAACCTGAGGTTCTGGAAGATGTATCTGATTTGTCTGATTCAGTGGATGGTGTTACTGAAGTGCTCCAGCCTGATTCAGAAGACAGAGATGCAAGTCCTG TCAATTGGGATACTGACACCTCAGAAGTTCATCCTCCCACTGAAGCCAGTAGCAGTGGAGTCAGTGGCTTGTCATCTGTGCCAAATGGAACAACTGAAAA AAGGAACACATATGCAATGGATGATAGTTCCTCAACATGCTCTACAGATTCAGTCCCTTCAGTGGTAATGAATGGCTCCTACAAGGGGAACTCTTACTCG AACTATCAATTCGAAAAATCGCCTGGCAGAGGGAAGAACCAGCGGGGTAAGATGGCACGTGATGGGAGTTGGACAACTGAAATGGATAATCAGCCTTCTG AGCCTGCATCAGATACTGGTGATCTTGGCGATATCACAAGAAGTAGCAAGGCTGGTGATTGTGAGCTGGAGGCTGTTGTTCATGATTTGCGGGATAGGAT GATGAGGCTTGAACAGCATGTAATTAAGACAGAAAAGGAAGACAAAGTTGTTTCTATGCAAAAGCAGATGAGTGACAAAGACCTGGTTGATGTTGAAAGA CCTAAAGAAAAGACAGCAGCTGTGCCATCTTCTCCCAGAAGCCCTCAAAGAAGTCCTAAAAATGTCTCATCCACTGTACCACTGAAGTCAGAAAGCAAGG GTTCAGCAACCGTGGATCTTGGTCTAGTTAAGAAAGCATCTTCAAATTGCTCACAGCAGGCTGATAAAGCTGCCACGTCAATTACCTCCCCCAAAAATGC TGCTATTCCCAAACCCGAGACCCAGAATGCATCAACTGCAAAACAGTCTGACAAACCAACTCTGCAACAATTGCCTGCCATGTCGAGGCCCTCCAGTGCT CCTCTGGTGCCCGGTCCAAGGCCAACTGCTGCTCCTGTGTCCCTGGTCCAAACAACTCCTTTACTTGCTCGTTCAGTTAGTGCAGCTGGCTGGCTGGGTC CTGACCCTTCATCAGCTACTCGTAGTTATGTTCCTCAGTCCTATCGAAATGCCATAATTGGTAATGCTGTTGGTTCTAGTTCATCTGGTTTCAGTCTTAC CAACTCTCCAAGTACCAGAGTGAACCTATCAGCACACGTGCAGCCATCTACTTTGGTATCTGCACCAATGTTCTTACCACCTTTGAACTCTGATAGGGTA GACCCAAACGCTCTCCAATCCGGCTTTCCTTTTGGCATGGTAACTCAGGATGTCTTACAGAATGGACGCCAATGGATGGAGAGCTCTCAAAGGGATGCTA GTAGAAGCATGAGCAGTGACCCTTCTTCCCTGGTAAATGGCATACAAAAAATTGACTTGTACAATCCTATATGCAGCAGATCACAGGAGCACTACTCCAG TGAGTTCCCAGCCTGTACTTCTGGGTGTCAGACCCCAGGTGGGGTGACAGATGAGTTCCCACATCTTGATATTATCAATGATTTGCTTAATGATGAACAT GCTGTTGGGAAGGCATCTGAGGCAAGCAGAGTCTTCCATAGCAATGGTCCACACCTATTGAATCGACAGTTTTCTTTTCCAAGTGACATGGGTATATCGA GTGATTTGGGTTCCTCAACCAGCAGCTCTTGCAGGTTCGAGCGGACCAGGAGTTACCATGATGGTGGATTTCAGAGGAGCTATAGCTCTTCTGGAAGCCA TTTTGACACACCAAGGGAATTTATTCCACAAGCTAGCCCACTGCCTTATGCAAATGGGCATATTGATGGGTTGATTCCAAACCAGTGGCAGATATCTGGT TCTGATATTTCCTTGATGAACATGAGGAATGCTGACGGTGATAGTTACCCATACTTTAACCCAGAGTATTCAAATATGGCAAGCGGTGTCAATGGCTATA CAGTATTTCGGCCTTCAAATGGACATTGA
AA sequence Show only first row Show all	>Potri.008G163300.3 pacid=42806108 polypeptide=Potri.008G163300.3.p locus=Potri.008G163300 ID=Potri.008G163300.3.v4.1 annot-version=v4.1 MAGIVSEEAGVGRSTEGISSGLRCQSGEALAEWRSSEQVENGTPSTSPPYWDTDDDDDGGPKPSELYGRYTWKIEKFSQINKRELRSNAFEVGGYKWYIL IYPQGCDVCNHLSLFLCVANHDKLLPGWSHFAQFTIAVVNKDPKKSKYSDTLHRFWKKEHDWGWKKFMELSKVSDGFLDAADTLIIKAQVQVIREKADRP FRCLDCQYRRELVRVYLTNVEQICRRFVEERRGKLGKLIEDKNRWSSFCGFWLGMDQNTRRRMSREKTDVILKVVVKHFFIEKEVTSTLVMDSLYSGLKA LEGQSKSKKGRAKLLDAEEMPAPIVRVEKDMFVLVDDVLLLLERAAIEPLPPKDEKGPQNRTKDGSSGEDFNKDSIERDERRLTELGRRTVEIFVLAHIF NHKIEVSYQEAVALKRQEELIREEEAAWLAESEQKAKRGATEKEKKLKKKQAKQKRNNRKGKDKGRDDRSSVAVVDNHQETNTSNEKKEYVVEEVKPVVE KPEVLEDVSDLSDSVDGVTEVLQPDSEDRDASPVNWDTDTSEVHPPTEASSSGVSGLSSVPNGTTEKRNTYAMDDSSSTCSTDSVPSVVMNGSYKGNSYS NYQFEKSPGRGKNQRGKMARDGSWTTEMDNQPSEPASDTGDLGDITRSSKAGDCELEAVVHDLRDRMMRLEQHVIKTEKEDKVVSMQKQMSDKDLVDVER PKEKTAAVPSSPRSPQRSPKNVSSTVPLKSESKGSATVDLGLVKKASSNCSQQADKAATSITSPKNAAIPKPETQNASTAKQSDKPTLQQLPAMSRPSSA PLVPGPRPTAAPVSLVQTTPLLARSVSAAGWLGPDPSSATRSYVPQSYRNAIIGNAVGSSSSGFSLTNSPSTRVNLSAHVQPSTLVSAPMFLPPLNSDRV DPNALQSGFPFGMVTQDVLQNGRQWMESSQRDASRSMSSDPSSLVNGIQKIDLYNPICSRSQEHYSSEFPACTSGCQTPGGVTDEFPHLDIINDLLNDEH AVGKASEASRVFHSNGPHLLNRQFSFPSDMGISSDLGSSTSSSCRFERTRSYHDGGFQRSYSSSGSHFDTPREFIPQASPLPYANGHIDGLIPNQWQISG SDISLMNMRNADGDSYPYFNPEYSNMASGVNGYTVFRPSNGH

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04300			TRAF-like superfamily protein ...		Potri.008G163300 [exp]	0	1
AT5G53930			unknown protein		Potri.011G115900 [exp]	2.44	0.8638
AT5G51410			LUC7 N_terminus domain-contain...		Potri.003G109000 [exp]	3.00	0.8431
AT2G13370		CHR5	chromatin remodeling 5 (.1)		Potri.001G253400 [exp]	3.16	0.8696
AT2G18760		CHR8	chromatin remodeling 8 (.1)		Potri.005G226500 [exp]	3.74	0.8228
AT4G20740		EMB3131	EMBRYO DEFECTIVE 3131, Pentatr...		Potri.003G203100 [exp]	6.32	0.8378
AT4G03000			RING/U-box superfamily protein...		Potri.010G027900 [exp]	8.83	0.7680
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Potri.004G201900 [exp]	9.48	0.8206
AT3G05670			RING/U-box protein (.1)		Potri.005G021000 [exp]	10.19	0.8229
AT1G15280			CASC3/Barentsz eIF4AIII bindin...		Potri.003G056500 [exp]	12.36	0.8206
AT2G16940			Splicing factor, CC1-like (.1....		Potri.009G137200 [exp]	14.96	0.8381

Compare expression of checked genes

Potri.008G163300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.