Plant FIBer expression Database

Potri.008G163500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G52070 155 / 1e-44 Agenet domain-containing protein (.1)
AT5G42670 144 / 3e-40 Agenet domain-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011444
[exp]
198 / 7e-61 AT5G42670 191 / 1e-59 Agenet domain-containing protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0049 Tudor PF05641 Agenet Agenet domain
Representative CDS sequence
>Potri.008G163500.1 pacid=42808678 polypeptide=Potri.008G163500.1.p locus=Potri.008G163500 ID=Potri.008G163500.1.v4.1 annot-version=v4.1
ATGGATGAGAATGAACTTCCTTTTAAAGTGGGTCAGCTTGCAGAGGCAAGATCTTTTGCTCAAGGTTACCGTGGTGCTTGGTTCCGTTGCAAGATAATAG
ATATTGCCCGAAGAGATTCTGGGATGCAGTATGCATTGCAATATTATGACTTTCCAGATGAAAAACTAAATTGGACAAAGCTATATCAATATCCAAAGCC
TAGACTCAAGAATACAGAGAGGCAATTGATGGTGCGCCCTTACTTTCCTTCTGTCTATCTTGAAAGCAAATTGTCTGAAATCAAGACCATCTCAGAAGTG
GTAGTCGTTGTGAATGATGTTTGGAAGGTGGGAGATTTTGTAGATTGGTGGACTGATGGTTGTTATTGGTCTGGAAGACTATCTAAAGAATTAGGAAATG
ACAAATATCAGATTGATTTGTTTCCACCCCCTGCTGGTGAAGGGTCGTCTTATGAAGCTTCCTCCAAGGATTTCCGCCCATCCTTGAGTTGGTCTCCAGA
AAATGGTTGGACAGTGCCAATTCCTTCGGGGATCGACAATCATCATCCATGTGCTCGGTTGATCAAACCTGTGAATCAAGGGAGTTCCATAAACTTGGCA
GTCCATGCAGCTGATAAAATGAGAAAGGACCCCGAAGATACAGTTAGAGCATCTTACGAGCTGAATGCTTCGCTTTCTTCCCATATTGCAACTAGTAGAT
ATGAACTAATGGGAAAAGGGCCTTTGAACCCTGCTGCATCTAACGAGACACGTACACCGGGAAGAAATATAGTGTTAGGTGTAACAAATGGTGGAGCTGC
TAAATCAAGGTGCTCAGATAGTCAATCAAGTCCACAAGTTAGAGATGTATCAGCTGAAGTGGCGGAAGATGCTGGCGGGAAGGACAATGACGATAATGAC
ACCCCCCTGAAGAAGATGAGAACTGATGGAGGTATATGTTCGGATTCCACATGCTCAGATACGATAGGAGCTGCTATTCTGGACCTGGAGGTGCTTGTAA
ACCGGGTAAAATGGATGAAGGATGCCTTGAAGTTTGGGATGCCTTTGTCAAATACTGCAAGACTGTCATGGAAGTTTTTGGAACACCGAGGACCTTCCAG
ACACGAGTGA
AA sequence
>Potri.008G163500.1 pacid=42808678 polypeptide=Potri.008G163500.1.p locus=Potri.008G163500 ID=Potri.008G163500.1.v4.1 annot-version=v4.1
MDENELPFKVGQLAEARSFAQGYRGAWFRCKIIDIARRDSGMQYALQYYDFPDEKLNWTKLYQYPKPRLKNTERQLMVRPYFPSVYLESKLSEIKTISEV
VVVVNDVWKVGDFVDWWTDGCYWSGRLSKELGNDKYQIDLFPPPAGEGSSYEASSKDFRPSLSWSPENGWTVPIPSGIDNHHPCARLIKPVNQGSSINLA
VHAADKMRKDPEDTVRASYELNASLSSHIATSRYELMGKGPLNPAASNETRTPGRNIVLGVTNGGAAKSRCSDSQSSPQVRDVSAEVAEDAGGKDNDDND
TPLKKMRTDGGICSDSTCSDTIGAAILDLEVLVNRVKWMKDALKFGMPLSNTARLSWKFLEHRGPSRHE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G52070 Agenet domain-containing prote... Potri.008G163500
[exp]
0 1
AT5G47830 unknown protein Potri.002G123400
[exp]
6.48 0.8511
AT4G38240 GNTI, CGL1 N-ACETYLGLUCOSAMINYLTRANSFERAS... Potri.004G206900
[exp]
11.00 0.8279
AT5G25760 PEX4, UBC21 ubiquitin-conjugating enzyme 2... Potri.018G039200
[exp]
13.26 0.8490
AT1G47640 unknown protein Potri.014G037100
[exp]
13.74 0.8106
AT4G17486 PPPDE putative thiol peptidase... Potri.006G154400
[exp]
14.86 0.8609
AT4G14660 NRPE7 RNA polymerase Rpb7-like, N-te... Potri.010G077200
[exp]
19.89 0.8172
AT4G34700 CIB22, AtCIB22 B22 subunit of eukaryotic mito... Potri.009G124600
[exp]
21.90 0.8448
AT3G58680 MBF1B, ATMBF1B multiprotein bridging factor 1... Potri.001G390400
[exp]
23.49 0.7442
AT4G04860 DER2.2 DERLIN-2.2 (.1) Potri.011G000900
[exp]
30.29 0.8225
AT1G15020 QSO2, ATQSOX1 quiescin-sulfhydryl oxidase 1 ... Potri.008G127300
[exp]
30.49 0.8267

Potri.008G163500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.