Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23160 661 / 0 Protein of unknown function (DUF668) (.1) AT5G04550 204 / 2e-57 Protein of unknown function (DUF668) (.1) AT5G51670 181 / 4e-50 Protein of unknown function (DUF668) (.1) AT1G34320 100 / 5e-22 Protein of unknown function (DUF668) (.1) AT5G08660 81 / 1e-15 Protein of unknown function (DUF668) (.1) AT1G30755 77 / 2e-14 Protein of unknown function (DUF668) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G074000 [exp] 1116 / 0 AT3G23160 657 / 0.0 Protein of unknown function (DUF668) (.1) Potri.008G026800 [exp] 356 / 3e-115 AT5G04550 677 / 0.0 Protein of unknown function (DUF668) (.1) Potri.010G233700 [exp] 354 / 2e-114 AT5G04550 677 / 0.0 Protein of unknown function (DUF668) (.1) Potri.006G117000 [exp] 323 / 7e-103 AT5G04550 356 / 8e-116 Protein of unknown function (DUF668) (.1) Potri.012G129900 [exp] 198 / 1e-56 AT5G51670 466 / 6e-162 Protein of unknown function (DUF668) (.1) Potri.015G131800 [exp] 167 / 2e-45 AT5G51670 442 / 1e-152 Protein of unknown function (DUF668) (.1) Potri.019G001500 [exp] 91 / 7e-19 AT1G34320 591 / 0.0 Protein of unknown function (DUF668) (.1) Potri.013G115300 [exp] 90 / 2e-18 AT1G34320 889 / 0.0 Protein of unknown function (DUF668) (.1) Potri.001G305800 [exp] 89 / 4e-18 AT1G34320 593 / 0.0 Protein of unknown function (DUF668) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021210 [exp] 777 / 0 AT3G23160 659 / 0.0 Protein of unknown function (DUF668) (.1) Lus10022201 [exp] 756 / 0 AT3G23160 657 / 0.0 Protein of unknown function (DUF668) (.1) Lus10008987 [exp] 327 / 3e-104 AT5G04550 566 / 0.0 Protein of unknown function (DUF668) (.1) Lus10028839 [exp] 195 / 3e-55 AT5G04550 282 / 2e-89 Protein of unknown function (DUF668) (.1) Lus10002840 [exp] 159 / 9e-42 AT5G04550 308 / 8e-98 Protein of unknown function (DUF668) (.1) Lus10031691 [exp] 152 / 9e-40 AT5G51670 452 / 2e-156 Protein of unknown function (DUF668) (.1) Lus10031110 [exp] 152 / 1e-39 AT5G51670 454 / 8e-157 Protein of unknown function (DUF668) (.1) Lus10021138 [exp] 145 / 4e-37 AT5G04550 300 / 2e-94 Protein of unknown function (DUF668) (.1) Lus10006049 [exp] 94 / 9e-20 AT1G34320 919 / 0.0 Protein of unknown function (DUF668) (.1) Lus10017260 [exp] 89 / 4e-18 AT1G30755 567 / 0.0 Protein of unknown function (DUF668) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05003 [poplar] [flax] DUF668 Protein of unknown function (DUF668)
Representative CDS sequence Show only first row Show all	>Potri.008G164700.1 pacid=42807823 polypeptide=Potri.008G164700.1.p locus=Potri.008G164700 ID=Potri.008G164700.1.v4.1 annot-version=v4.1 ATGGTGGCAGAAGCTTGGATTTTGAAGATGGGAAACCAGGTAAGTAGCAATCTTAAGCACGCACTTCTTCTAGAATCTTACAAGAAAAGGAACAGCCACA GCCACAGCCACAACCATAACCACCCAAGAAATAAACAGAATTCGAAAGAAAAACAAATCATTGGTATCTTGTCTTTTGAGGTTGCTAATGCTTTGTCTAA AACTGTACACCTTTATAAATCCCTCACTGATTCTGAGATCTCGAAGCTTAAAAATGAGATCTTGAAATGCGAGGGAGTCAAGAACTTGGTGTCCAATGAT GAAAGTTACCTTATTCAGCTTGCTTTAGCTGAGAAACTTGATGACTTGAACAGGGTAGCTAATGTTGTTTCTAGGCTGGGAAAGAAGTGTGTCGAGCCTG CTTTGCAGGGTTTTGAGCATGTTTATGCGGATATTATTAGTGGGGTTATTGATGTGAAGGAATTGGGGTTTTTGGTTAAGGATATGGAGGGTATGGTTAA GAAGATGGAGAGGTATGTGAATGCGACTTCTAATTTGTATAGCGAACTGGAGGTTTTGAATGAATTGGAGCAGGCTACCAAGAAATTTCAGCAGAATCAA CACGAGGAGAGTCGAAGGGCGTTTGAGCAGAAACTTATTTGGCAGAAGCAGGATGTGAGGCATCTTAAGGAGATTTCTCTTTGGAACCAGACTTGTGATA AGGTTGTTGAATTGCAGGCTAGGACTGTGTGCACTATTTACGCGAGGATCTCTACTGTTTTTGAGGAATCTAAGTTGCAAAAGAAGGGCCCTGGGGCTGC TGAAGGGGCCTGTTCCTCCCCTCCTATGAAGGAAGAATGCGGGGAGGTTTCAGATCATATTGGTGATTTACTTAGTTCGCAAAGGATTTCAGGACCGCTG AGACGGGCTGTTACCAAGAGAAGTAGCAATGGGTGTCAATCGGGACCAATTGAGAGAGCCATGATAGAGAAGAGGGAGACACATATTAAGCCTCAGATTG CTTCACGGAAAGGTGAAGTTGATCTATTATTTCGAACTGAAGATATTGTTTTTCCATGCGGGACTAGTCCTGGAAGGCTTTTTTTGGATTGCCTCAGTTT AAGTAGTTCAGCTTCAAAGTTTGATGATGATTACAGCTGTGTTGTTGTGGACGAGGACAAGAGGAGCCAAATTTCCCGTTGTTATAGTGTTGGCAATGGT AGTTTGAAGAGAGAGAACCCAAGCCCTTCAAGCTGTTCCAATCAGGGTCTCTCTTTTAGTGGAGATCAAAGAAATGCCAGGTGTGGTGCGATGAATAATG CACGGTTTGGCGCCAAAAGTAGGCTGATGGTGTATGCTCCCCCTTCCACTATTGGAGGATCTGCCTTGGCCTTGCATTATGCAAATGTCATAATTGTTAT AGAGAAGCTGCTACGCTATCCCCATTTAGTGGGTGAGGAAGCGAGGGATGACTTGTATCAGATGTTACCGTCAAGTTTAAGAATGTCTCTGAGGACTAAC CTCAAGTCCTACGTGAAGAATCTTGCTATATATGATGCTCCACTTGCCCATGACTGGAAAGATACTCTTGATGGGATACTGAGGTGGCTTTCTCCTCTTG CTCATAACATGATCAGGTGGCAAAGTGAGCGTAATTTTGAGCAGCACCAAATTGTGAAGCGGACAAATGTTCTTCTGCTTCAGACATTGTATTTTGCTGA CAGGGGAAAGACGGAGACAGCTATTTGTGAACTTCTTGTTGGGTTGAATTATATATGCCGTTATGAACATCAGCAGAATGCGTTGTTAGATTGTGCAAGT AGTTTTGATTTTGAAGACTGCATGCAATGGCAATTGCAGTGCCGAGCTTCTTTTGTTGATTAA
AA sequence Show only first row Show all	>Potri.008G164700.1 pacid=42807823 polypeptide=Potri.008G164700.1.p locus=Potri.008G164700 ID=Potri.008G164700.1.v4.1 annot-version=v4.1 MVAEAWILKMGNQVSSNLKHALLLESYKKRNSHSHSHNHNHPRNKQNSKEKQIIGILSFEVANALSKTVHLYKSLTDSEISKLKNEILKCEGVKNLVSND ESYLIQLALAEKLDDLNRVANVVSRLGKKCVEPALQGFEHVYADIISGVIDVKELGFLVKDMEGMVKKMERYVNATSNLYSELEVLNELEQATKKFQQNQ HEESRRAFEQKLIWQKQDVRHLKEISLWNQTCDKVVELQARTVCTIYARISTVFEESKLQKKGPGAAEGACSSPPMKEECGEVSDHIGDLLSSQRISGPL RRAVTKRSSNGCQSGPIERAMIEKRETHIKPQIASRKGEVDLLFRTEDIVFPCGTSPGRLFLDCLSLSSSASKFDDDYSCVVVDEDKRSQISRCYSVGNG SLKRENPSPSSCSNQGLSFSGDQRNARCGAMNNARFGAKSRLMVYAPPSTIGGSALALHYANVIIVIEKLLRYPHLVGEEARDDLYQMLPSSLRMSLRTN LKSYVKNLAIYDAPLAHDWKDTLDGILRWLSPLAHNMIRWQSERNFEQHQIVKRTNVLLLQTLYFADRGKTETAICELLVGLNYICRYEHQQNALLDCAS SFDFEDCMQWQLQCRASFVD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23160			Protein of unknown function (D...		Potri.008G164700 [exp]	0	1
AT4G09820	bHLH	BHLH42, TT8, bH...	TRANSPARENT TESTA 8, basic hel...		Potri.002G054100 [exp]	1.41	0.8543
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Potri.004G083300 [exp]	3.46	0.8307	Pt-SKOR.3
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Potri.001G442200 [exp]	4.24	0.8373
AT1G79840	HD	GL2	GLABRA 2, HD-ZIP IV family of ...		Potri.001G184100 [exp]	9.21	0.8332	GL2.2
AT5G01950			Leucine-rich repeat protein ki...		Potri.016G140300 [exp]	10.00	0.8370
AT4G15080			DHHC-type zinc finger family p...		Potri.016G018400 [exp]	10.58	0.8184
AT3G22170	FAR1_related	FHY3	far-red elongated hypocotyls 3...		Potri.006G020700 [exp]	10.77	0.8400	Pt-FHY3.2
AT1G34370	C2H2ZnF	STOP1	sensitive to proton rhizotoxic...		Potri.019G085400 [exp]	11.00	0.8129
AT3G50700	C2H2ZnF	ATIDD2	indeterminate(ID)-domain 2 (.1...		Potri.013G019200 [exp]	12.60	0.7647
AT4G32140			EamA-like transporter family (...		Potri.006G266400 [exp]	12.68	0.7918

Compare expression of checked genes

Potri.008G164700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.