Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43500 774 / 0 ATARP9 actin-related protein 9 (.1.2) AT3G27000 50 / 2e-06 ATARP2, WRM, ARP2 WURM, actin related protein 2 (.1) AT2G42100 50 / 3e-06 Actin-like ATPase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G073600 [exp] 1149 / 0 AT5G43500 773 / 0.0 actin-related protein 9 (.1.2) Potri.006G139900 [exp] 45 / 0.0001 AT5G09810 554 / 0.0 actin 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022198 [exp] 899 / 0 AT5G43500 685 / 0.0 actin-related protein 9 (.1.2) Lus10021206 [exp] 173 / 2e-50 AT5G43500 117 / 6e-23 actin-related protein 9 (.1.2) Lus10032484 [exp] 56 / 7e-08 AT1G18450 690 / 0.0 actin-related protein 4 (.1) Lus10042980 [exp] 45 / 0.0001 AT1G18450 578 / 0.0 actin-related protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [poplar] [flax] Actin_ATPase PF00022 [poplar] [flax] Actin Actin
Representative CDS sequence Show only first row Show all	>Potri.008G165000.1 pacid=42807066 polypeptide=Potri.008G165000.1.p locus=Potri.008G165000 ID=Potri.008G165000.1.v4.1 annot-version=v4.1 ATGGATTACTTGAAGACGGTAATTCCTTCTCAGCTCGTCGCCGACCGAGGCTCCAATTTAGTAGTCATCAATCCAGGCTCTGCAAATATCAGAATAGGAT TAGCTCCACAAGATGCTCCCTTAAATATTCCTCACTGCATTGCTCGTTACACCAATCAACGTCCCAAATTCAATCTCCAAGACCAGATGCTGAATTCTCA GGTCACAACAGCACAGCACATGGAACGCGAGAAGGCTTATGATACAATAGCGTCGTTATTGAAGATACCTTTTCTAGATGAAGAGGTTGCGAACAATTCG TTCCCGCGCAAGATAGGGCGTGCTGATGGATACAATCCACAGAGTGGCAGGAGTGTGGCTTTTCAGTGGGCTAATGTATACGAGCAGGACGCAGGTTCCT CTTTGGCATTAGGAACATCAAAAAGTAAAGGTATAACTGGTGAATCTGTGGAGAAGCATGAAGGCACTGGTGCTGAGGAGATATATTCTGGGAACCACAA ATTCAGAGGACACATTTTTGGTGAAGAAGCACTTAGAATCTCCCCAACAGAGCCATACTGCTTAAGCCGTCCTATTCGCAGAGGTCATTTCAACATTTCA CAACATTATCCTTTGCAGCAGGTGCTTGAGGACATGCATGCTATTTGGGATTGGATATTGATAGAGAAACTGCACATCCCTCACTCAGAAAGAAACATGT ATTCTGCAGTTCTTGTTTTGCCAGAAACATTTGATAATCGCGAAATAAAGGAAATGTTGTCTATAGCATTACGTGACTTGCGCTTTAGCTCAGCAGTAGT ACACCAGGAAGGTCTTGCTGCAGTTTTTGGGAATGGGTTATCAACGGCATGCATAGTTAATATGGGTGCTCAGGTGACATCTGTAGTTTGCATTGAGGAT GGAGTGGCTTTACCTAATACGGAAAAGACTTTGCCTTTTGGTGGAGAGGATATATCAAGATGCCTTCTCTGGACCCAGAGGCATCATCAGACATGGCCCC AAATTCGGACTGACATGTTGACAAAGCCTATAGATTTGTTGATGCTTAATAGACTGAAAGAGTCCTATTGTGGAATCAAGGAGGGGGAGCTTGATGCTGT TGCTGTAGTTCATTCTTACGAGGATGGCATGCCTGCTGGATCTCACAAAACTCGACTAACTGCTCTTAATGTGCCTCCCATGGGTCTGTTCTACCCCACG CTTTTAATTCCAGATATATATCCACCACCACCTCGTTCTTGGTTCCATGACTATGAGAATATGCTAGAAGACACATTGCATATGGAATATTCTAGAAGGC CTGACATGTCAGATGGTTTATTTCCTGGCATTAGTGTTGGATATCCAATGTGGGAGAGCTATCCAATTTTTTCTTCTAAGCCAAAGAAAGAAGAGAAGGT TGGCCTTGCTGAAGCTATCACTAGTAGCATTCTTTCCACTGGTCGTATAGACCTCCAGAGAAAGTTGTTTTGCAGCATACAATTGATTGGTGGAGTGGCT TTGACAGCTGGTGTTATTCCTGCTGTGGAGGAAAGAGTTTTACATGCAATTCCCCCAAATGAAGCAATTGATACTGTTGAGGTTCTACAGTCAAGAACAA ATCCAACTTTTGTGCCTTGGAAAGGCGGAGCAATCCTTGGAATTCTTGATTTTGGTCGCGATGCATGGATTTACCGGGAGGATTGGATTCACAATGGGAT CCATTTTCGAAGTGGCAGAAAATACAAGGACTCTTACTATCTTCAAGCACAAGCAACATGTTACATAAACTCTTAG
AA sequence Show only first row Show all	>Potri.008G165000.1 pacid=42807066 polypeptide=Potri.008G165000.1.p locus=Potri.008G165000 ID=Potri.008G165000.1.v4.1 annot-version=v4.1 MDYLKTVIPSQLVADRGSNLVVINPGSANIRIGLAPQDAPLNIPHCIARYTNQRPKFNLQDQMLNSQVTTAQHMEREKAYDTIASLLKIPFLDEEVANNS FPRKIGRADGYNPQSGRSVAFQWANVYEQDAGSSLALGTSKSKGITGESVEKHEGTGAEEIYSGNHKFRGHIFGEEALRISPTEPYCLSRPIRRGHFNIS QHYPLQQVLEDMHAIWDWILIEKLHIPHSERNMYSAVLVLPETFDNREIKEMLSIALRDLRFSSAVVHQEGLAAVFGNGLSTACIVNMGAQVTSVVCIED GVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDMLTKPIDLLMLNRLKESYCGIKEGELDAVAVVHSYEDGMPAGSHKTRLTALNVPPMGLFYPT LLIPDIYPPPPRSWFHDYENMLEDTLHMEYSRRPDMSDGLFPGISVGYPMWESYPIFSSKPKKEEKVGLAEAITSSILSTGRIDLQRKLFCSIQLIGGVA LTAGVIPAVEERVLHAIPPNEAIDTVEVLQSRTNPTFVPWKGGAILGILDFGRDAWIYREDWIHNGIHFRSGRKYKDSYYLQAQATCYINS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G43500		ATARP9	actin-related protein 9 (.1.2)		Potri.008G165000 [exp]	0	1
AT5G09580			unknown protein		Potri.001G285000 [exp]	2.00	0.8747
AT5G44090			Calcium-binding EF-hand family...		Potri.002G035800 [exp]	3.16	0.8713
					Potri.007G054500 [exp]	5.65	0.8362
AT3G61860		ATRSP31, At-RS3...	arginine/serine-rich splicing ...		Potri.014G101800 [exp]	9.27	0.7663	Pt-RSP31.1
AT2G44280			Major facilitator superfamily ...		Potri.009G024600 [exp]	10.90	0.8094
AT3G01820			P-loop containing nucleoside t...		Potri.015G093200 [exp]	12.00	0.8026
AT1G10240	FAR1_related	FRS11	FAR1-related sequence 11 (.1)		Potri.004G227600 [exp]	12.96	0.8221
AT5G46410		SSP4	SCP1-like small phosphatase 4 ...		Potri.011G078300 [exp]	14.28	0.8405
AT2G31130			unknown protein		Potri.019G089900 [exp]	15.23	0.7775
AT1G04010		ATPSAT1	phospholipid sterol acyl trans...		Potri.014G195500 [exp]	16.37	0.7534

Compare expression of checked genes

Potri.008G165000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.