Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14420 171 / 2e-55 HR-like lesion-inducing protein-related (.1) AT1G04340 162 / 1e-51 HR-like lesion-inducing protein-related (.1) AT5G43460 149 / 8e-47 HR-like lesion-inducing protein-related (.1) AT3G23180 84 / 2e-20 HR-like lesion-inducing protein-related (.1) AT3G23190 78 / 3e-18 HR-like lesion-inducing protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G073400 [exp] 242 / 2e-83 AT4G14420 170 / 8e-55 HR-like lesion-inducing protein-related (.1) Potri.005G222200 [exp] 186 / 5e-61 AT4G14420 159 / 1e-50 HR-like lesion-inducing protein-related (.1) Potri.008G165100 [exp] 157 / 6e-50 AT1G04340 172 / 6e-56 HR-like lesion-inducing protein-related (.1) Potri.010G073500 [exp] 136 / 1e-41 AT5G43460 149 / 8e-47 HR-like lesion-inducing protein-related (.1) Potri.002G040900 [exp] 94 / 6e-26 AT4G14420 62 / 1e-13 HR-like lesion-inducing protein-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041149 [exp] 187 / 1e-61 AT4G14420 187 / 7e-62 HR-like lesion-inducing protein-related (.1) Lus10021877 [exp] 181 / 3e-59 AT4G14420 189 / 1e-62 HR-like lesion-inducing protein-related (.1) Lus10021205 [exp] 129 / 2e-38 AT1G04340 182 / 1e-59 HR-like lesion-inducing protein-related (.1) Lus10041152 [exp] 96 / 1e-25 AT5G43460 144 / 5e-45 HR-like lesion-inducing protein-related (.1) Lus10022198 [exp] 96 / 2e-23 AT5G43500 685 / 0.0 actin-related protein 9 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0131 [poplar] [flax] DoxD-like PF05514 [poplar] [flax] HR_lesion HR-like lesion-inducing
Representative CDS sequence Show only first row Show all	>Potri.008G165200.1 pacid=42806862 polypeptide=Potri.008G165200.1.p locus=Potri.008G165200 ID=Potri.008G165200.1.v4.1 annot-version=v4.1 ATGGCTTTCATCTCTTTCGTCGGGAGAGTTCTCTTTGCCTCTGTTTTCATTCTCTCTGCTTGGCAAGAGTTCAACGAATTTGGTTCTGATGGTGGGCCGG CAGCACATATTATGGCACCTAAATTCCGTTCTTTCTCAAAACATGTGTCGTCTCATACTGGATTTCAAGTGCCACATTTTGAAATGAAGCACGCCGTTGC TGCTGCTATGTCTGTGAAAGCTGTTGGAAGCCTTATTTTCATCCTTGGCAGTTCTATTGGAGCTTATCTTCTGCTTCTGCACCAGCTCATCGTCACCCCA ATATTGTATGATTTTTACAACTATGACGCTGACACCAAGGAATTTAACCTGCTTTTTGCAAAGTTTGCACAGAACTTGGCACTGTTTGGGGCATTGCTCT TTTTTATTGGCATGAAGAACTCAATCCCAAGGAGACAACTGAAGAAGAGGTCTCCCAAACCAAAAGCATTATAA
AA sequence Show only first row Show all	>Potri.008G165200.1 pacid=42806862 polypeptide=Potri.008G165200.1.p locus=Potri.008G165200 ID=Potri.008G165200.1.v4.1 annot-version=v4.1 MAFISFVGRVLFASVFILSAWQEFNEFGSDGGPAAHIMAPKFRSFSKHVSSHTGFQVPHFEMKHAVAAAMSVKAVGSLIFILGSSIGAYLLLLHQLIVTP ILYDFYNYDADTKEFNLLFAKFAQNLALFGALLFFIGMKNSIPRRQLKKRSPKPKAL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14420			HR-like lesion-inducing protei...		Potri.008G165200 [exp]	0	1
AT1G16300		GAPCP-2	glyceraldehyde-3-phosphate deh...		Potri.010G172400 [exp]	5.19	0.7060
AT4G35630		PSAT	phosphoserine aminotransferase...		Potri.005G099900 [exp]	5.47	0.7329
AT2G02180		TOM3	tobamovirus multiplication pro...		Potri.010G097900 [exp]	7.07	0.7331	Pt-TOM3.2
AT5G20680		TBL16	TRICHOME BIREFRINGENCE-LIKE 16...		Potri.006G140300 [exp]	10.95	0.6609
AT5G40760		G6PD6	glucose-6-phosphate dehydrogen...		Potri.017G070200 [exp]	14.00	0.7297	Pt-ACG12.2
AT2G45300			RNA 3'-terminal phosphate cycl...		Potri.002G146400 [exp]	16.70	0.7503
AT2G01140		PDE345	PIGMENT DEFECTIVE 345, Aldolas...		Potri.008G125900 [exp]	18.16	0.7113
AT1G08290	C2H2ZnF	WIP3	WIP domain protein 3 (.1)		Potri.009G143700 [exp]	22.84	0.6244
AT5G40250			RING/U-box superfamily protein...		Potri.017G072300 [exp]	25.47	0.6396
AT4G34200		EDA9	embryo sac development arrest ...		Potri.001G300900 [exp]	39.29	0.7069

Compare expression of checked genes

Potri.008G165200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.