Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06620 444 / 1e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06650 418 / 3e-146 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G59540 413 / 5e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G06640 409 / 1e-142 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT5G59530 405 / 6e-141 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G30830 402 / 3e-140 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G30840 397 / 7e-138 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G03410 389 / 2e-134 2A6 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G04350 386 / 8e-134 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G03400 384 / 8e-133 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G156200 [exp] 504 / 3e-180 AT1G06650 430 / 7e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.010G073300 [exp] 467 / 2e-165 AT1G06620 455 / 7e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073166 [exp] 459 / 2e-162 AT1G06620 470 / 7e-167 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073100 [exp] 414 / 2e-144 AT1G06650 414 / 2e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.010G073232 [exp] 404 / 8e-141 AT1G06620 402 / 7e-140 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.013G045000 [exp] 376 / 9e-130 AT1G06620 369 / 6e-127 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.005G222300 [exp] 340 / 3e-115 AT1G06620 340 / 3e-115 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G135800 [exp] 340 / 5e-115 AT1G06620 323 / 1e-108 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G040700 [exp] 323 / 7e-109 AT1G06620 330 / 2e-111 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022189 [exp] 480 / 2e-170 AT1G06620 418 / 3e-146 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10023499 [exp] 449 / 2e-158 AT1G06620 400 / 2e-139 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10040380 [exp] 437 / 2e-153 AT1G06620 387 / 4e-134 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10040382 [exp] 436 / 7e-153 AT1G06620 411 / 2e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021943 [exp] 432 / 3e-151 AT1G06620 443 / 5e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022191 [exp] 426 / 5e-149 AT1G06620 456 / 3e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022195 [exp] 407 / 8e-142 AT1G06620 432 / 1e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10037796 [exp] 402 / 7e-140 AT1G06620 442 / 4e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022193 [exp] 402 / 9e-140 AT1G06620 455 / 1e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10027585 [exp] 400 / 5e-139 AT1G06620 429 / 3e-150 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF03171 [poplar] [flax] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily CL0029 [poplar] [flax] Cupin PF14226 [poplar] [flax] DIOX_N non-haem dioxygenase in morphine synthesis N-terminal
Representative CDS sequence Show only first row Show all	>Potri.008G165400.2 pacid=42807085 polypeptide=Potri.008G165400.2.p locus=Potri.008G165400 ID=Potri.008G165400.2.v4.1 annot-version=v4.1 ATGCTGAGCACCAGTTCAGGCAAAACTGAATCTGAGTTGAAATCTGATTACGACCGGAGAAGTGAGCTAAAGGCTTTCGATGATTCCAAAGCTGGCGTAA AGGGCCTTGTGGATTCTGGAGTTGCAAACATTCCCCAGATTTTTATCCATGAATCTAGTACAAATGACAAGTTAAGTTCAGGCCACCATAATTTTACCGT ACCAGTAATAGACTTCAATGGCATACATGAAGATGCAAGTCTTCGTGGGAAGATTGTTGAGGAACTTAGAGAAGCTTGCAAGAAATGGGGTTTCTTTCAG GTTATCAATCATGGGATTTCATCAAGTGTTCTTGATGATATGATAAATGGCGTGCGTAGATTTCATGAACAAGACACAGAGGTGAAGAAAGAATTCCATA CACGCGATGAAATGAGAAAGGTAGCATATAATACCAACTTTGATTTCTATCAAGCACCAGCAGCTAATTGGAGGGATTCTTTGTATTGCCTTGTAGCCCC TCATCCACCCCGTCCTGAGGAATTGCCTGCAGTTTGTAGGGATATTATGATTGATTACACGAACAAAGTGATGTCATTAGGGCTAATTATATTCGAGTTG TTGTCGGAAGCTCTGGGGCTAAAACCCAGCCACTTGAAAGATATGGGCTGTGCAGAGGGACTGTATTTTATAGGTCATTACTACCCGGCATGCCCGCAAC CAGACTTGACCCTGGGCCTTAGCAAGCATACAGATAGTGCCTTCCTCGCGGTTGTTCTGCAAGACCACTTGGGTGGCCTTCAAGTCCTCCATGAAGATCA ATGGATTGATGTTACCCCTATTCCTGGAGCTCTAATAGTAAACCTGGGAGATATGACACAGCTAATTACCAACGGCAAGTTCAAAAGTGTGTATCATAGG GTGGTGGCAAAAAACACCGGTCCAAGAATATCAAGTGCCTGCTTTTTTAGAACGCATTTGCAGCAAGAGAGTTCTTCTAGAGTGTACGGACCAATTAAGG AACTGCTGTCGGAAGAAAACCCACCAGTATATCGGCAAACGACTATTAAAGATTACGTCTCATACACTTACTCAAAAGGGCTCGACGGGAACCCTCGACT GGAACATTTCAAGCTGTAA
AA sequence Show only first row Show all	>Potri.008G165400.2 pacid=42807085 polypeptide=Potri.008G165400.2.p locus=Potri.008G165400 ID=Potri.008G165400.2.v4.1 annot-version=v4.1 MLSTSSGKTESELKSDYDRRSELKAFDDSKAGVKGLVDSGVANIPQIFIHESSTNDKLSSGHHNFTVPVIDFNGIHEDASLRGKIVEELREACKKWGFFQ VINHGISSSVLDDMINGVRRFHEQDTEVKKEFHTRDEMRKVAYNTNFDFYQAPAANWRDSLYCLVAPHPPRPEELPAVCRDIMIDYTNKVMSLGLIIFEL LSEALGLKPSHLKDMGCAEGLYFIGHYYPACPQPDLTLGLSKHTDSAFLAVVLQDHLGGLQVLHEDQWIDVTPIPGALIVNLGDMTQLITNGKFKSVYHR VVAKNTGPRISSACFFRTHLQQESSSRVYGPIKELLSEENPPVYRQTTIKDYVSYTYSKGLDGNPRLEHFKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Potri.008G165400 [exp]	0	1
AT4G27360			Dynein light chain type 1 fami...		Potri.001G407900 [exp]	1.41	0.9696
AT5G50700		HSD1	hydroxysteroid dehydrogenase 1...		Potri.015G099900 [exp]	2.00	0.9735
AT2G23910			NAD(P)-binding Rossmann-fold s...		Potri.003G093700 [exp]	6.00	0.9648
AT3G62820			Plant invertase/pectin methyle...		Potri.014G129400 [exp]	6.32	0.9636
AT3G21780		UGT71B6	UDP-glucosyl transferase 71B6 ...		Potri.016G017300 [exp]	6.92	0.9605
AT3G15570			Phototropic-responsive NPH3 fa...		Potri.003G058800 [exp]	8.48	0.9642
AT2G26580	YABBY	YAB5	YABBY5, plant-specific transcr...		Potri.018G129800 [exp]	9.16	0.9630
AT2G26580	YABBY	YAB5	YABBY5, plant-specific transcr...		Potri.006G067800 [exp]	11.83	0.9579
AT5G10250		DOT3	DEFECTIVELY ORGANIZED TRIBUTAR...		Potri.005G075400 [exp]	12.48	0.9516
AT2G03440		ATNRP1	nodulin-related protein 1 (.1)		Potri.010G161200 [exp]	14.07	0.9027

Compare expression of checked genes

Potri.008G165400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.