Plant FIBer expression Database

Potri.008G165800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G43430 429 / 2e-154 ETFBETA electron transfer flavoprotein beta (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022185
[exp]
464 / 4e-168 AT5G43430 419 / 2e-150 electron transfer flavoprotein beta (.1.2.3)
Lus10021198
[exp]
457 / 2e-165 AT5G43430 408 / 6e-146 electron transfer flavoprotein beta (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0039 HUP PF01012 ETF Electron transfer flavoprotein domain
Representative CDS sequence
>Potri.008G165800.1 pacid=42807821 polypeptide=Potri.008G165800.1.p locus=Potri.008G165800 ID=Potri.008G165800.1.v4.1 annot-version=v4.1
ATGAAGATAATGGTAGCAATAAAGAGAGTCGTTGACTACGCCGTGAAGATCAGAGTCAAATCAGACAAGAGTGGAGTTGAGACCCAAAATGTGAAGATGT
CGATGAACCCATTTTGCGAGATAGCTTTAGAGGAGGCGCTTCGAATCAAGCAGTCTGGATTGGCATCCGAGGTTGTCGCTGTAAGTATGGGCCCAACCCA
GTGCGTTGATACGCTGCGGACAGGTCTTGCTATGGGGGCTGATAGAGGGATTCATGTGGAGTCCACAGCTGCTTTGTTTCCTCTTACCGTGGCTAAGCTT
TTGAAGGCTCTAGTGGAGGTCGAGAAGCCTGGACTCATTATTTTGGGCAAACAGGCTATTGATGATGATTGCAACCAAACCGGTCAAATGGTGGCAGGGT
TGCTAGGTTGGCCTCAGGGGACATTTGCTTCAAAGGTCTTGCTCGACACGGAGAAGCAGGTAGCTACTGTAGAAAGAGAAGTGGATGGTGGTCTTGAGAC
TTTATGCTTAGACCTACCTGCAGTGATTACCACTGATTTGAGACTGAACCAACCAAGGTACGCGACACTGCCCAACATTATGAAAGCAAAATCAAAGGTC
ATCAAGAAGTACACTCCACAAGAATTGAACGTGGAGGTTAAATCTGATATAGAGGTTGTTGAAGTCACGGAACCTCCAAAGAGAAAAGCAGGGGTTATTA
TTTCTTCTGTAGATGAGTTGATTGATAAGCTTCGAAACGAGGCTCATGTCATTTAA
AA sequence
>Potri.008G165800.1 pacid=42807821 polypeptide=Potri.008G165800.1.p locus=Potri.008G165800 ID=Potri.008G165800.1.v4.1 annot-version=v4.1
MKIMVAIKRVVDYAVKIRVKSDKSGVETQNVKMSMNPFCEIALEEALRIKQSGLASEVVAVSMGPTQCVDTLRTGLAMGADRGIHVESTAALFPLTVAKL
LKALVEVEKPGLIILGKQAIDDDCNQTGQMVAGLLGWPQGTFASKVLLDTEKQVATVEREVDGGLETLCLDLPAVITTDLRLNQPRYATLPNIMKAKSKV
IKKYTPQELNVEVKSDIEVVEVTEPPKRKAGVIISSVDELIDKLRNEAHVI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G43430 ETFBETA electron transfer flavoprotein... Potri.008G165800
[exp]
0 1
AT3G61200 Thioesterase superfamily prote... Potri.002G155500
[exp]
9.21 0.7854
AT2G44360 unknown protein Potri.001G230100
[exp]
10.09 0.7881
AT4G24990 ATGP4 Ubiquitin family protein (.1) Potri.012G103100
[exp]
10.72 0.7964
AT2G35680 Phosphotyrosine protein phosph... Potri.001G154700
[exp]
14.07 0.7633
AT1G19910 AVA-2PE, ATVHA-... VACUOLAR-TYPE H+ ATPASE C2, AT... Potri.002G082700
[exp]
14.89 0.7881
AT5G55290 ATPase, V0 complex, subunit E ... Potri.011G092600
[exp]
18.11 0.7868
AT2G02760 ATUBC2 ubiquitin-conjugating enzyme 2... Potri.015G064000
[exp]
18.33 0.7255
AT2G04520 Nucleic acid-binding, OB-fold-... Potri.014G160900
[exp]
19.59 0.7518
AT4G31300 PBA1 N-terminal nucleophile aminohy... Potri.018G145900
[exp]
20.78 0.7704 Pt-PBA1.1
AT5G42190 SKP1B, ASK2 Arabidopsis SKP-like 2, E3 ubi... Potri.005G109900
[exp]
23.87 0.7187

Potri.008G165800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.