Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04360 312 / 2e-104 RING/U-box superfamily protein (.1) AT5G43420 293 / 4e-97 RING/U-box superfamily protein (.1) AT4G17905 104 / 2e-25 ATL4H RING/U-box superfamily protein (.1) AT3G16720 100 / 3e-24 ATL2 TOXICOS EN LEVADURA 2 (.1) AT5G17600 101 / 6e-24 RING/U-box superfamily protein (.1) AT4G40070 100 / 6e-24 RING/U-box superfamily protein (.1) AT3G03550 92 / 6e-21 RING/U-box superfamily protein (.1) AT2G42360 89 / 2e-20 RING/U-box superfamily protein (.1) AT4G15975 88 / 4e-20 RING/U-box superfamily protein (.1) AT1G23980 90 / 8e-20 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G072700 [exp] 595 / 0 AT5G43420 300 / 7e-100 RING/U-box superfamily protein (.1) Potri.002G039700 [exp] 312 / 5e-105 AT5G43420 246 / 4e-79 RING/U-box superfamily protein (.1) Potri.003G093100 [exp] 131 / 9e-35 AT5G17600 196 / 1e-59 RING/U-box superfamily protein (.1) Potri.001G141200 [exp] 119 / 1e-30 AT5G17600 207 / 1e-63 RING/U-box superfamily protein (.1) Potri.013G073500 [exp] 108 / 9e-27 AT3G03550 262 / 2e-85 RING/U-box superfamily protein (.1) Potri.002G101800 [exp] 102 / 3e-24 AT1G72220 195 / 3e-58 RING/U-box superfamily protein (.1) Potri.010G010500 [exp] 98 / 4e-23 AT3G16720 202 / 1e-63 TOXICOS EN LEVADURA 2 (.1) Potri.019G043900 [exp] 96 / 1e-22 AT3G03550 223 / 3e-71 RING/U-box superfamily protein (.1) Potri.007G097500 [exp] 95 / 1e-21 AT5G10380 145 / 2e-40 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021197 [exp] 282 / 2e-93 AT1G04360 268 / 2e-87 RING/U-box superfamily protein (.1) Lus10024881 [exp] 161 / 1e-46 AT1G04360 153 / 2e-43 RING/U-box superfamily protein (.1) Lus10000710 [exp] 160 / 2e-46 AT1G04360 155 / 3e-44 RING/U-box superfamily protein (.1) Lus10012745 [exp] 105 / 1e-25 AT4G33565 168 / 4e-49 RING/U-box superfamily protein (.1) Lus10013618 [exp] 97 / 1e-22 AT5G17600 220 / 1e-69 RING/U-box superfamily protein (.1) Lus10015901 [exp] 92 / 1e-20 AT1G72220 175 / 3e-51 RING/U-box superfamily protein (.1) Lus10031515 [exp] 92 / 1e-20 AT3G05200 232 / 1e-73 RING/U-box superfamily protein (.1) Lus10015167 [exp] 91 / 1e-20 AT3G05200 226 / 2e-71 RING/U-box superfamily protein (.1) Lus10023617 [exp] 91 / 5e-20 AT5G05810 219 / 1e-68 RING/U-box superfamily protein (.1) Lus10037490 [exp] 91 / 6e-20 AT3G16720 224 / 2e-70 TOXICOS EN LEVADURA 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.008G165900.1 pacid=42808236 polypeptide=Potri.008G165900.1.p locus=Potri.008G165900 ID=Potri.008G165900.1.v4.1 annot-version=v4.1 ATGGATCTTGTAAGCAAAAGCTATGGCTCTCAATCTCTTCCACCAATGACAAGTCCTGGTGGCTCATCAATTTTTGGACCTCGTACTCATTCTTCAGATA CAAGCTTCCCAATTATAGCCATTGCCATTATAGGAATTCTGGCCACGGCTTTCTTGCTAGTAAGCTATTACATCTTTGTCATCAAATGCTGTCTGAATTG GCACCGTATCGATCTTCTAAGGCGATTATCCCTATCAAGAAATGGAAATCACGAAGACCCTTTGATGGCCTACTCTCCTGCTGCAATAGTGTCGCGTGGA CTTGACGAGTCAGTGATAAGGTCAATCCCAGTATTTAAGTTCAAGAAAGAAGGGAACAGTTTTAGTAACCTTGGCGAAAGAAACTTCTGCGAGTGTGCAG TTTGCTTGAACGAGTTTCAAGAAGCCGAGAGGCTAAGAAATTTACCAAATTGTAACCATGTTTTTCATATTGATTGCATTGATGTTTGGCTTCAAAGCAA TGCTAATTGCCCACTCTGTAGAACAAGCATTTCGAGCACCACAAGATTCCCAATTGATTATGTTATTGCTCCAAGCTCTTCACCCCAAGATCCAAATCCT TACAGTGGAAGTCCCATGGGCGGAGATGAAGATTACGTTGTCATTGAGTTAAGTAATCACAGCTCTACAGATCAAACATTGCTTGCAGCACATGAAAGAT TGAATTCAGGAGAGTTATCAGCACGTTCAGTTAGTCCTTCGCCGAAGACGATAGAGCAGAGAGTTGGTCACAAGAAATCAAGGAAGTTTAATAAGGTTAC CAGCATGGGAGATGAATGCATTGATACTAGAGGCAAAGATGATCAATTCGGATTGATTCAACCCATCAGAAGGTCTTTTTCAATGGACTCGTCAGCAGAT TGGCAGCTTTATTTATCTATTCAAGAGATAGTGCAGCAGAGCAGGCAACTAACCGAGGTCAGTCCGGTTGAAGGTTGTAGTGGTAGAGCAAGAAGAACTT TCTTTTCTTTTGGTCATGTTAGAGGATCCAGAAGCAATACAGTCTTACCTGTTTATTTGCAGTCGTAA
AA sequence Show only first row Show all	>Potri.008G165900.1 pacid=42808236 polypeptide=Potri.008G165900.1.p locus=Potri.008G165900 ID=Potri.008G165900.1.v4.1 annot-version=v4.1 MDLVSKSYGSQSLPPMTSPGGSSIFGPRTHSSDTSFPIIAIAIIGILATAFLLVSYYIFVIKCCLNWHRIDLLRRLSLSRNGNHEDPLMAYSPAAIVSRG LDESVIRSIPVFKFKKEGNSFSNLGERNFCECAVCLNEFQEAERLRNLPNCNHVFHIDCIDVWLQSNANCPLCRTSISSTTRFPIDYVIAPSSSPQDPNP YSGSPMGGDEDYVVIELSNHSSTDQTLLAAHERLNSGELSARSVSPSPKTIEQRVGHKKSRKFNKVTSMGDECIDTRGKDDQFGLIQPIRRSFSMDSSAD WQLYLSIQEIVQQSRQLTEVSPVEGCSGRARRTFFSFGHVRGSRSNTVLPVYLQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04360			RING/U-box superfamily protein...		Potri.008G165900 [exp]	0	1
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Potri.001G332300 [exp]	1.41	0.8489
AT5G51100		FSD2	Fe superoxide dismutase 2 (.1)		Potri.015G110400 [exp]	2.64	0.8606
AT1G21340	DOF	AtDof1,2	Dof-type zinc finger DNA-bindi...		Potri.005G188900 [exp]	2.64	0.8176
AT2G24400			SAUR-like auxin-responsive pro...		Potri.006G278100 [exp]	3.16	0.8279
AT5G06800	GARP		myb-like HTH transcriptional r...		Potri.016G048000 [exp]	4.69	0.8040
AT4G25420		AT2301, GA5, AT...	GA REQUIRING 5, ARABIDOPSIS TH...		Potri.014G073700 [exp]	4.69	0.7677
AT3G57170			N-acetylglucosaminyl transfera...		Potri.006G044500 [exp]	5.09	0.7911
AT1G75717			unknown protein		Potri.005G238400 [exp]	5.29	0.7882
AT2G07560		AHA6	H\(+\)-ATPase 6, H\(+\)-ATPase...		Potri.001G048300 [exp]	6.00	0.8011	Pt-HA1.2
AT5G66390			Peroxidase superfamily protein...		Potri.007G019300 [exp]	8.24	0.8291

Compare expression of checked genes

Potri.008G165900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.