Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08650 287 / 2e-97 ATPPCK1, PPCK1 phosphoenolpyruvate carboxylase kinase 1 (.1.2) AT3G04530 263 / 6e-88 ATPPCK2, PEPCK2, PPCK2 phosphoenolpyruvate carboxylase kinase 2 (.1) AT1G50700 215 / 2e-66 CPK33 calcium-dependent protein kinase 33 (.1) AT1G76040 215 / 4e-66 CPK29 calcium-dependent protein kinase 29 (.1.2) AT3G20410 210 / 3e-64 CPK9 calmodulin-domain protein kinase 9 (.1) AT3G10660 211 / 5e-64 ATCPK2, CPK2 calmodulin-domain protein kinase cdpk isoform 2 (.1) AT1G12580 207 / 2e-63 PEPKR1 phosphoenolpyruvate carboxylase-related kinase 1 (.1) AT5G04870 209 / 3e-63 AK1, ATCPK1, CPK1 calcium dependent protein kinase 1 (.1) AT4G04720 207 / 3e-63 CPK21 calcium-dependent protein kinase 21 (.1) AT1G12680 206 / 3e-63 PEPKR2 phosphoenolpyruvate carboxylase-related kinase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G071400 [exp] 481 / 4e-174 AT1G08650 298 / 1e-101 phosphoenolpyruvate carboxylase kinase 1 (.1.2) Potri.019G018100 [exp] 316 / 8e-109 AT3G04530 379 / 2e-133 phosphoenolpyruvate carboxylase kinase 2 (.1) Potri.013G046100 [exp] 306 / 5e-105 AT3G04530 366 / 1e-128 phosphoenolpyruvate carboxylase kinase 2 (.1) Potri.004G015500 [exp] 215 / 3e-66 AT4G04720 797 / 0.0 calcium-dependent protein kinase 21 (.1) Potri.003G120800 [exp] 213 / 2e-65 AT1G12580 605 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Potri.012G134600 [exp] 211 / 1e-64 AT1G12580 569 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Potri.006G200600 [exp] 210 / 8e-64 AT5G04870 842 / 0.0 calcium dependent protein kinase 1 (.1) Potri.008G014700 [exp] 209 / 1e-63 AT5G04870 922 / 0.0 calcium dependent protein kinase 1 (.1) Potri.011G003400 [exp] 207 / 2e-63 AT4G04720 815 / 0.0 calcium-dependent protein kinase 21 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042560 [exp] 311 / 7e-107 AT1G08650 344 / 1e-119 phosphoenolpyruvate carboxylase kinase 1 (.1.2) Lus10014657 [exp] 301 / 7e-103 AT1G08650 351 / 2e-122 phosphoenolpyruvate carboxylase kinase 1 (.1.2) Lus10021190 [exp] 285 / 2e-97 AT3G04530 186 / 1e-58 phosphoenolpyruvate carboxylase kinase 2 (.1) Lus10011824 [exp] 266 / 2e-90 AT1G08650 227 / 3e-75 phosphoenolpyruvate carboxylase kinase 1 (.1.2) Lus10020046 [exp] 215 / 3e-66 AT4G04720 764 / 0.0 calcium-dependent protein kinase 21 (.1) Lus10006777 [exp] 214 / 6e-66 AT4G04720 764 / 0.0 calcium-dependent protein kinase 21 (.1) Lus10008958 [exp] 212 / 2e-65 AT5G04870 877 / 0.0 calcium dependent protein kinase 1 (.1) Lus10028862 [exp] 212 / 2e-64 AT5G04870 940 / 0.0 calcium dependent protein kinase 1 (.1) Lus10038889 [exp] 210 / 2e-64 AT1G12580 555 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Lus10021248 [exp] 212 / 3e-64 AT3G10660 809 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF14531 [poplar] [flax] Kinase-like Kinase-like
Representative CDS sequence Show only first row Show all	>Potri.008G166500.3 pacid=42806802 polypeptide=Potri.008G166500.3.p locus=Potri.008G166500 ID=Potri.008G166500.3.v4.1 annot-version=v4.1 ATGAGCGAAGCACTCAACAGAGACTACCAAATCTGCGAGGAGATCGGCCGTGGACGATTTGGTATTGTTTTCAGGTGCATCTCTCGCTCCACTGGCGATT CTTTCGCTGTCAAATCCATCGTCAAGAGTCTCGTCTCTGGCGACTCCCTAGAAGCGCAATGCCTCTTAACAGAGCCCAAGACCCTCCACCTCCTTTCTCC TCACCCCCACATAATCCAACTCCACAACCTCTACGAAGACGAAACTCACCTTCACATGGTCATCGATTTATGCTCTAAACAAGACCTTCACGATTTGATA ATCACTAACGGGGTTCTTTCAGAGAACGAAGCTAGAGTGGTTTTCACTCAACTGATGAAAGCTATCTCTCACTGTCATACATACGGCATCGTTCATCGAG ACATCAAACCTGAAAACATCTTATTTGACGAGGGGAATGCAATTAAGGTAGCGGATTTTGGATCTTCTGAGGTTGTAATGGAAGGGGAGATGGTGAATGG TGTAGTGGGGACACCGTATTATGTGCCCCCTGAGGTTTTGTTGGGAAAAGAGTACGGAGAGAAGGTGGATGTGTGGAGTGCTGGGGTGGTGTTGTACATA ATGTTAACTGGATTTCCGCCGTTTTATGGGGAAACAGTGGTGGAGATATTTGAGGCGGTTTTGAGAGGGAATTTGAGGTTTTCTGCAAGAGTTTTTCAGT CGGCGTCGACAAGTGTTAAAGATCTTTTACGGAGGATGCTCTGTAAAGATGTCTCCAGGCGATTTTCTGCTGAACAAGTGCTAAGACATCCATGGGTAGC AAATGCGGCTGGTTTAACATGA
AA sequence Show only first row Show all	>Potri.008G166500.3 pacid=42806802 polypeptide=Potri.008G166500.3.p locus=Potri.008G166500 ID=Potri.008G166500.3.v4.1 annot-version=v4.1 MSEALNRDYQICEEIGRGRFGIVFRCISRSTGDSFAVKSIVKSLVSGDSLEAQCLLTEPKTLHLLSPHPHIIQLHNLYEDETHLHMVIDLCSKQDLHDLI ITNGVLSENEARVVFTQLMKAISHCHTYGIVHRDIKPENILFDEGNAIKVADFGSSEVVMEGEMVNGVVGTPYYVPPEVLLGKEYGEKVDVWSAGVVLYI MLTGFPPFYGETVVEIFEAVLRGNLRFSARVFQSASTSVKDLLRRMLCKDVSRRFSAEQVLRHPWVANAAGLT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08650		ATPPCK1, PPCK1	phosphoenolpyruvate carboxylas...		Potri.008G166500 [exp]	0	1
					Potri.009G034951 [exp]	5.65	0.7880
AT1G55200			Protein kinase protein with ad...		Potri.002G130300 [exp]	14.96	0.7084
					Potri.010G080501 [exp]	15.87	0.7072
AT5G51160			Ankyrin repeat family protein ...		Potri.015G111300 [exp]	16.37	0.7698
AT1G30500	CCAAT	NF-YA7	"nuclear factor Y, subunit A7"...		Potri.006G053500 [exp]	22.44	0.6452
AT4G27950	AP2_ERF	CRF4	cytokinin response factor 4 (....		Potri.013G158500 [exp]	25.45	0.7218
AT5G65290			LMBR1-like membrane protein (....		Potri.005G072100 [exp]	27.74	0.6857
AT5G47530			Auxin-responsive family protei...		Potri.014G161900 [exp]	33.31	0.7288
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Potri.005G185000 [exp]	34.56	0.7333
AT1G56430		ATNAS4	ARABIDOPSIS THALIANA NICOTIANA...		Potri.010G143133 [exp]	37.30	0.7243

Compare expression of checked genes

Potri.008G166500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.