Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14380 87 / 2e-21 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G224200 [exp] 69 / 1e-14 AT2G20500 53 / 3e-09 unknown protein Potri.002G038400 [exp] 59 / 6e-11 AT2G20500 58 / 7e-11 unknown protein Potri.003G062300 [exp] 45 / 1e-06 AT1G15385 58 / 8e-13 unknown protein Potri.001G406600 [exp] 42 / 0.0001 AT1G61260 192 / 1e-58 Protein of unknown function (DUF761) (.1) Potri.018G053000 [exp] 41 / 0.0002 AT2G26110 167 / 2e-49 Protein of unknown function (DUF761) (.1) Potri.001G171701 [exp] 39 / 0.0003 AT1G15385 53 / 7e-11 unknown protein Potri.006G228800 [exp] 40 / 0.0004 AT2G26110 142 / 5e-40 Protein of unknown function (DUF761) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011818 [exp] 103 / 5e-27 AT4G14380 59 / 3e-10 unknown protein Lus10021182 [exp] 80 / 4e-18 AT4G14380 52 / 6e-08 unknown protein Lus10021869 [exp] 74 / 4e-16 AT4G14380 40 / 8e-04 unknown protein Lus10041144 [exp] 66 / 1e-12 AT5G43330 590 / 0.0 cytosolic-NAD-dependent malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1) Lus10033890 [exp] 52 / 2e-08 ND / Lus10003556 [exp] 52 / 3e-08 ND / Lus10026978 [exp] 41 / 0.0002 AT2G26110 122 / 2e-33 Protein of unknown function (DUF761) (.1) Lus10024988 [exp] 41 / 0.0002 AT2G26110 172 / 1e-51 Protein of unknown function (DUF761) (.1) Lus10019517 [exp] 40 / 0.0007 AT2G26110 148 / 5e-43 Protein of unknown function (DUF761) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05553 [poplar] [flax] DUF761 Cotton fibre expressed protein
Representative CDS sequence Show only first row Show all	>Potri.008G167200.1 pacid=42807967 polypeptide=Potri.008G167200.1.p locus=Potri.008G167200 ID=Potri.008G167200.1.v4.1 annot-version=v4.1 ATGTCCCGCTCAAGACTTGCAAAGAAGCTTCAACCAGCCAAGAAGGCATTGAAACGCTTCGCCAAGACGCTGCAATCAAAACTCCATGATCTCAACCTTT CTAAAGCAGTCAAGGTCATCAAAACCAACACCGATCGCCTCCTCGCTTATTGCTCTAGCCGTCTCTTTCTTCCCTTCAAGAAACGTTCCATAACAAAACC AAGAGGCCGCAGCCGCCAGTGTAACCATCGTTACAGCAATAAAACTCTGCTTCATAATACCTTACCGCCTATATACATAGACAACCTCTATGCCTCAGAA CCAAGCTTGATGTCTGCCAGGCATTTCCACGCACATGCAGAAACAAGTAGTGGAGGTAAAGCTGTGACTGTTGAGAAAGTTGTCCCAAGAAAAGAAGACA AGGCAAGGAAGAAGAGCGTGTATAGCATTGAAGATGCATGGAGAGAAGTTGTCGCTAGATCACCGCAGCTGCGGCCAGTGGATGAGAGGGCTGAAGAATT TATATACAAATTTCGTGAAGAGATTAAGCTTCAAAAGGAGAAATCAATTCTTGAATACGAGGAGAGGTTGGCTAGGGGTGCCTAG
AA sequence Show only first row Show all	>Potri.008G167200.1 pacid=42807967 polypeptide=Potri.008G167200.1.p locus=Potri.008G167200 ID=Potri.008G167200.1.v4.1 annot-version=v4.1 MSRSRLAKKLQPAKKALKRFAKTLQSKLHDLNLSKAVKVIKTNTDRLLAYCSSRLFLPFKKRSITKPRGRSRQCNHRYSNKTLLHNTLPPIYIDNLYASE PSLMSARHFHAHAETSSGGKAVTVEKVVPRKEDKARKKSVYSIEDAWREVVARSPQLRPVDERAEEFIYKFREEIKLQKEKSILEYEERLARGA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14380			unknown protein		Potri.008G167200 [exp]	0	1
AT5G55730		FLA1	FASCICLIN-like arabinogalactan...		Potri.011G093500 [exp]	1.00	0.9538
					Potri.010G190900 [exp]	4.24	0.9198
AT4G39010		ATGH9B18	glycosyl hydrolase 9B18 (.1)		Potri.004G162200 [exp]	5.19	0.9502
					Potri.011G020275 [exp]	5.47	0.9083
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Potri.016G098600 [exp]	9.89	0.9100	XTH32.2
AT2G36985		DVL16, ROT4	ROTUNDIFOLIA4, DEVIL 16, DVL f...		Potri.006G125600 [exp]	11.40	0.9129	Pt-ROT4.1
AT4G15140			unknown protein		Potri.011G108700 [exp]	12.72	0.8889
AT1G67030	C2H2ZnF	ZFP6	zinc finger protein 6 (.1)		Potri.002G199200 [exp]	13.85	0.9339
AT1G67050			unknown protein		Potri.004G098700 [exp]	14.28	0.9135
					Potri.003G076700 [exp]	17.66	0.8902

Compare expression of checked genes

Potri.008G167200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.