Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04420 612 / 0 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G04690 130 / 2e-34 KV-BETA1, KAB1 potassium channel beta subunit 1 (.1) AT1G60680 108 / 3e-26 AGD2 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60710 107 / 7e-26 ATB2 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60690 106 / 1e-25 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60730 99 / 1e-22 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2), NAD(P)-linked oxidoreductase superfamily protein (.3) AT1G60750 97 / 3e-22 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G10810 94 / 3e-21 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G06690 92 / 2e-20 NAD(P)-linked oxidoreductase superfamily protein (.1) AT5G53580 88 / 5e-19 AtPLR1 pyridoxal reductase 1, NAD(P)-linked oxidoreductase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G042100 [exp] 308 / 2e-102 AT1G04420 294 / 4e-97 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.001G052100 [exp] 123 / 9e-32 AT1G04690 602 / 0.0 potassium channel beta subunit 1 (.1) Potri.008G158300 [exp] 106 / 1e-25 AT1G60680 389 / 2e-135 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.013G040000 [exp] 104 / 7e-25 AT1G60710 376 / 2e-130 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.013G040100 [exp] 100 / 2e-23 AT1G60710 369 / 1e-127 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.014G147700 [exp] 97 / 3e-22 AT1G60710 559 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.002G234201 [exp] 96 / 1e-21 AT1G60710 547 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.015G006900 [exp] 92 / 1e-20 AT5G53580 556 / 0.0 pyridoxal reductase 1, NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.002G055500 [exp] 91 / 4e-20 AT1G06690 557 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010340 [exp] 634 / 0 AT1G04420 606 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10028045 [exp] 288 / 6e-95 AT1G04420 286 / 2e-94 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10003751 [exp] 181 / 3e-54 AT1G04420 174 / 1e-51 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10021866 [exp] 175 / 8e-54 AT1G04420 169 / 9e-52 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10011751 [exp] 127 / 2e-33 AT1G04690 619 / 0.0 potassium channel beta subunit 1 (.1) Lus10023674 [exp] 127 / 4e-33 AT1G04690 619 / 0.0 potassium channel beta subunit 1 (.1) Lus10029615 [exp] 117 / 2e-29 AT1G60710 399 / 2e-139 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041184 [exp] 112 / 1e-27 AT1G60690 374 / 1e-129 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10023701 [exp] 108 / 4e-26 AT1G60690 527 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10037437 [exp] 105 / 3e-25 AT1G60690 571 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00248 [poplar] [flax] Aldo_ket_red Aldo/keto reductase family
Representative CDS sequence Show only first row Show all	>Potri.008G167400.2 pacid=42807342 polypeptide=Potri.008G167400.2.p locus=Potri.008G167400 ID=Potri.008G167400.2.v4.1 annot-version=v4.1 ATGGCTTTCTCCTCCAGCACCTTCTCAACAATCCCTGCATTTCTCTACAAAAGCACTCTCCATGCACCGAATGGTAAAACAAGGCTTAGACCACCCATCA CTGCTACGCTCGCAGAGAAGAAGAATACCAACGCCTTACAGTACAGGAAACTTGGAGACTCTGATCTTGAAATCAGCGAAATCACTATGGGAACTATGAC ATTTGGGGAACAGAACACAGAGAAAGAAGCTCATGAAATGCTTAGCTATTCATTTGACCATGGAATCAATATTTTTGACACTGCAGAAGCATATCCTGTT CCGGTGAAGAAGGAGACACAAGGAAGAACAGATCTCTATGTTGGTAACTGGTTGAAGTCTCAACCCCGAGACAAGGTTATTTTGGCTACAAAAGTATGTG GGTATTCGGAGAGGTTAAGTTATCTTCGTGGCAATGCTAAGGTTTTGCGGGTTGATGCTGCTAATATTAAAGAGAGTGTGGAGAAAAGCCTCAAGCGCCT TGGCACTGATTACATTGACCTGTTGCAAATCCACTGGCCTGATCGCTATGTACCAGTGTTTGGTGAGTTTTCGTATGATTATTCAAAATGGAGACCAAGT TCGCCATTTGTGGAGCAACTGAAGGCCTTTCAAGACCTGATTGATGAAGGAAAGGTACGCTATATTGGTGTTTCAAATGAGACTTCATATGGAGTGATGG AGTTTGTTCATGCAGCCAAAGTTGAAGGATTGCCAAAGATCATCAGTATCCAAAACAGCTATAGTCTGCTAGTTAGGTGTCGTTTTGAAGTTGATCTCCT TGAAGTCTGCCACCCAAAAAATTACAACATTGGCTTGCTTGCTTACTCTCCATTGGGTAGTGGCATGCTGAGTGGGAAGTATTTGGATGTTAACTCCGAG GCTGCAAAGAAAGGAAGGCTGAACCTCTTCCCTGGCTACATGGAAAGATACAAAAATTCACTCTCCAGGGAAGCAACCGTACAGTATATTGAATTGGCCA AGAAGCATGGTCTAACTCCAGTTGAGCTTGCCCTTGGATTCGTTCGAGACCGTCCATTTGTGACAAGTTCAATCATTGGCTCAACTTCTCTTGAGCAACT AAAAGAAGATATCGATGCTATTATGACAGCCCCGCGACCTCTGCCAGCTGAACTAACTGCAGATATTGAAACTATTTTCAAGAGATACAAAGATCCGTCC ATCATTTAA
AA sequence Show only first row Show all	>Potri.008G167400.2 pacid=42807342 polypeptide=Potri.008G167400.2.p locus=Potri.008G167400 ID=Potri.008G167400.2.v4.1 annot-version=v4.1 MAFSSSTFSTIPAFLYKSTLHAPNGKTRLRPPITATLAEKKNTNALQYRKLGDSDLEISEITMGTMTFGEQNTEKEAHEMLSYSFDHGINIFDTAEAYPV PVKKETQGRTDLYVGNWLKSQPRDKVILATKVCGYSERLSYLRGNAKVLRVDAANIKESVEKSLKRLGTDYIDLLQIHWPDRYVPVFGEFSYDYSKWRPS SPFVEQLKAFQDLIDEGKVRYIGVSNETSYGVMEFVHAAKVEGLPKIISIQNSYSLLVRCRFEVDLLEVCHPKNYNIGLLAYSPLGSGMLSGKYLDVNSE AAKKGRLNLFPGYMERYKNSLSREATVQYIELAKKHGLTPVELALGFVRDRPFVTSSIIGSTSLEQLKEDIDAIMTAPRPLPAELTADIETIFKRYKDPS II

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04420			NAD(P)-linked oxidoreductase s...		Potri.008G167400 [exp]	0	1
AT3G07670			Rubisco methyltransferase fami...		Potri.014G169300 [exp]	2.00	0.9802
AT5G35170			adenylate kinase family protei...		Potri.018G113400 [exp]	2.44	0.9748
AT1G73280		SCPL3	serine carboxypeptidase-like 3...		Potri.013G124900 [exp]	3.16	0.9674
AT4G12800		PSAL	photosystem I subunit l (.1)		Potri.002G239700 [exp]	4.47	0.9716	Pt-PSAL.3
AT4G25170			Uncharacterised conserved prot...		Potri.003G107400 [exp]	6.00	0.9570
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Potri.013G070500 [exp]	6.70	0.9742	Pt-SIGB.2
AT1G22700			Tetratricopeptide repeat (TPR)...		Potri.013G114500 [exp]	7.14	0.9653
AT3G09050			unknown protein		Potri.006G096700 [exp]	8.94	0.9733
AT1G17650		GR2, GLYR2	glyoxylate reductase 2 (.1)		Potri.003G040800 [exp]	9.79	0.9692
AT5G47470			Nodulin MtN21 /EamA-like trans...		Potri.003G077300 [exp]	10.95	0.9646	N21L4

Compare expression of checked genes

Potri.008G167400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.