Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14368 1266 / 0 Regulator of chromosome condensation (RCC1) family protein (.1) AT3G23270 1246 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G76950 973 / 0 PRAF1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G42140 971 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G19420 827 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) AT5G12350 786 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G69710 715 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT3G47660 537 / 2e-174 Regulator of chromosome condensation (RCC1) family protein (.1) AT1G65920 468 / 1e-147 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G63860 182 / 1e-49 UVR8 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G190000 [exp] 1082 / 0 AT5G42140 1407 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.002G070300 [exp] 1037 / 0 AT5G42140 1422 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.001G276900 [exp] 840 / 0 AT5G19420 1483 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.009G071800 [exp] 832 / 0 AT5G19420 1610 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.T124906 [exp] 785 / 0 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.003G197600 [exp] 785 / 0 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.001G026900 [exp] 781 / 0 AT5G19420 1281 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.017G139600 [exp] 516 / 6e-165 AT1G65920 937 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.004G080900 [exp] 496 / 2e-157 AT1G65920 940 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030999 [exp] 1359 / 0 AT4G14368 1284 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10038991 [exp] 1326 / 0 AT4G14368 1265 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10027273 [exp] 1324 / 0 AT4G14368 1269 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10028600 [exp] 1062 / 0 AT1G76950 1516 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10029772 [exp] 1026 / 0 AT5G42140 1463 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10018904 [exp] 1021 / 0 AT1G76950 1520 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10042800 [exp] 1004 / 0 AT5G42140 1461 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10036030 [exp] 868 / 0 AT5G19420 1644 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10024157 [exp] 803 / 0 AT5G19420 1279 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10039525 [exp] 782 / 0 AT5G19420 1245 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00415 [poplar] [flax] RCC1 Regulator of chromosome condensation (RCC1) repeat CL0390 [poplar] [flax] zf-FYVE-PHD PF01363 [poplar] [flax] FYVE FYVE zinc finger CL0390 [poplar] [flax] PF08381 [poplar] [flax] BRX Transcription factor regulating root and shoot growth via Pin3 CL0390 [poplar] [flax] PF13713 [poplar] [flax] BRX_N Transcription factor BRX N-terminal domain CL0266 [poplar] [flax] PH PF16457 [poplar] [flax] PH_12 Pleckstrin homology domain
Representative CDS sequence Show only first row Show all	>Potri.008G167500.1 pacid=42806533 polypeptide=Potri.008G167500.1.p locus=Potri.008G167500 ID=Potri.008G167500.1.v4.1 annot-version=v4.1 ATGGCAGATCTTGTTAATTATGGGAATCCTGAGCGTGACATTGAGCAAGCACTAGTTACTTTGAAAAAAGGCACTCAATTAATCAAGTACAGCCGGAAAG GGAAACCCAAGTTTCGCGCCTTCAGACTTTCTCCGGATGAAACATCATTGATCTGGTTGTCACATGGACAAGAAAAGAACCTGAAATTGTCTTCTGTATT GAGAATCATCCCTGGACAGAGAACTGCCGTGTTTAGAAGATACTTGCGCCCTGAAAAGGATTACTTGTCATTTTCACTTCTATATAACAACGGTGAAAGA TCTCTTGATCTGATCTGCAAGGACAAAGTTGAGGCAGAGGTGTGGCTTGCAGGCCTCAAGGCATTGATTGGAAAAAATCATAATAGACGTACAAGAAGCA ATATTTCAGATTTTCAGCTAACTGATGGTGAGTTATATCAAAATGGTCGTCCTTTTGGTGCAACTCTAGAGTTCACTTCAAGTCTTGCCCGTGGCAGGGT GTCTATTGATTTAGGTTCTCGTGACAATCCTTTGGATTTGAGAAGCTCAGATGTGTCAGAACGATCAAGTATGCAACTAAGAGCAAGTACTGGAGGAGAT TTCCGAATTAGTGTTTCAAGCACTCCTAGCTGTTCGAGTGCTGGATCCGGTCCAGATGACATAGAATCCCTAGGTGATGTTTATATTTGGGGAGAAATAT GGAGTGATGGGGTTTTTCCTGATGGGTCTGTGAGCTCAGTTCCTACAAAGAACGATGTGCTTACTCCTAAGCCCTTAGAATCAAATGTAGTTCTTGATGT TCATCAAATTTCTTGTGGTGTACGTCATGTTGCTCTTGTGACAAGGCAAGGTGAGGTTTTCACCTGGGGAGAGGAATCTGGGGGGAGACTTGGTCATGGA ATTGAAGATCACTTTACTCATCCTAAACTTGTTGAGTCTTTGGCGGTCACTAATATTGATTATGTTGCATGTGGTGAGTATCATACATGTGCTATATCTA CATCTGGTGACTTATTTACCTGGGGTGATGGGAGCAATAATTCTGGACTTCTTGGTCATGGCACTGATGTTAGCCATTGGATACCAAAAAGAGTTTCAGG TCCTTTAGAAGGACTTCAGGTTTTATCCATCGCATGTGGAACGTGGCACTCAGCCTTGGCAACTTCAAACGGAAAATTATTTACATTTGGTGATGGAACG TTTGGTGCATTGGGCCATGGAGATCGAAAAAGTGTTTCAAGTCCCAAAGAACTTCAGTCGTTGAATGGGCTAAAAACCATAAAAGTTGCTTGCGGTGTAT GGCATACTGCAGCTATCGTAGAGGTAATGAGCCAATCTGGCTCAAACATTTCATCTAGAAAACTGTTCACTTGGGGTGATGGTGATAAGCACCGTTTGGG CCATGGAAACAAGGATGCTTATCTGCTTCCCACCTGTGTCTCTTCCCTTATCGACTACAACTTCCAACAGTTAGCATGTGGACATACAATGACTGTTGCC CTCACTACCTCAGGTCACGTGTTTACCATGGGTGGCTCTGCATATGGTCAGCTAGGAAATCCAAGCTCTAATGGAAAAATCCCTTGCTTAGTACAAGATA GATTGGTTGGTGAATTTGTTGAAGAAATTTCTTGTGGGGCATATCACACTGCTGTCTTAACATCAAGAAGTGAAGTATTCACTTGGGGGAGAGGTGCCAA TGGACAATTGGGACATGGAGACACGGAAGACAGGAAACTTCCGACATTGGTTGAAGCACTGAAAGAGAGGCATGTCAAGAATCTATCATGTGGCGCAAAT TTTACTTCCAGTATATGCATCCATAAGTGGGTTTCTGGAGCTGACCAATCAGTTTGCTCTGGTTGTCGACAAGCATTTGGTTTTACTAGAAAGAGGCACA ATTGTTACAATTGTGGGTTGGTGCACTGCCATAATTGCAGTTCCAAAAAAGCAATGAAGGCAGCATTAGCACCAACTCCTGGCAAACCACACCGTGTGTG TGATTCTTGCTATGCAAAACTCAAAGCTGCTGAGTCTGGAAATACTTCTGCTATTAATAGGAAAACTACTGTTCCACGCCGCTCCATGGACATAAGGGAA AAGATGGAAAGGGGAGAGCCCAGGTTTTCAAGAATTTTACTCTCTCCCACAACAGAACCTATAAAATACCTTGAGATCAAGTCAGGAAAGCAAGGGGCAC AATCTGAGGCTGCTTCCATAGTCCGAGCTTCACAAGTTCCATCACTTTTACCGCTAAAAGACGTTGCATTTCCAAGTTCTCCAAGTACTCTTCAAAATGC ATGGAAGCCTGCTCCTCCAATAGTGCCTCAGCTGACTGTTAACTCCTCTCAGCCCGCTGCCAACTCAAGACCTTCATCACCATACTCGAGGAGACCAAGT CCTCCACGCTCTGCCTCTCCGGGATTCTCCAGGGGTGTGATTGACAGCCTCAAGAAAACAAACGAGATTTTTAAGCAAGACATGACAAAAATGCAAAACC AAATTAAAACTTTGAAGAAAAAGTGTGATAACCAAGAATTGGAGATTCATAATCTAGAGAACCGTGCCAAAGGAGCTGCTAAATTGGCTGCAGCAGAATC TTCCAAGTCTAACATAGCCATGGAATTTGCCAAATCCATCACAAAAGAGTTGAAGGAGATGATGCAGCAGCTGCCTCCTGAGGGCCGAGAAACTGACACC TTGAAAGCCATTGATTCTAAAATAGAAGCTTTCCTAGAAAAAATTAGAGCATCTGAAAGTTCTTCCTTGCCAGAAAGCGTAGGGTCTGACTACCAAAATG CATCAGCATCAAGTCCTTTGACCAGTGACTCTTCTAACTTGCTGGAGAAAAGGATGGAAGGCCAAACAGATACTGTGAGAGCTACTGCGATGTCTCGTAC TGATGGAAGTGTCCCTGAGGAAAGCAGCAGATCATCTGTTTCTCATTTGACAGAGGCTGTACCTAGAGAAAGCTCAGAAAACGAGTCCAGAACACCTACA GCTTCAATAAAGAGAACTGAATCACAAAAAGAAATTATCGAACAATTTGAACCTGGGGTTTATGTAACTGTCATTCTACGTCCCAATGGAGTAAAGATCT TCAAGCGAGTCAAATTCAGTAAAAGAAGGTTTCAGGAGCAGCAAGCGGAAGTATGGTGGAAAGAAAACAAAGATAGACTACTTAAGAAATACAGTCCACC AACAATAAATGTCAGTCTGGTTGGAGGACCATCGACCCCGGTTGGATCATCCTCTACTCCAGCTCCTACTGAGGTAAATGAGGCAGGACCACCAGAAACA TAG
AA sequence Show only first row Show all	>Potri.008G167500.1 pacid=42806533 polypeptide=Potri.008G167500.1.p locus=Potri.008G167500 ID=Potri.008G167500.1.v4.1 annot-version=v4.1 MADLVNYGNPERDIEQALVTLKKGTQLIKYSRKGKPKFRAFRLSPDETSLIWLSHGQEKNLKLSSVLRIIPGQRTAVFRRYLRPEKDYLSFSLLYNNGER SLDLICKDKVEAEVWLAGLKALIGKNHNRRTRSNISDFQLTDGELYQNGRPFGATLEFTSSLARGRVSIDLGSRDNPLDLRSSDVSERSSMQLRASTGGD FRISVSSTPSCSSAGSGPDDIESLGDVYIWGEIWSDGVFPDGSVSSVPTKNDVLTPKPLESNVVLDVHQISCGVRHVALVTRQGEVFTWGEESGGRLGHG IEDHFTHPKLVESLAVTNIDYVACGEYHTCAISTSGDLFTWGDGSNNSGLLGHGTDVSHWIPKRVSGPLEGLQVLSIACGTWHSALATSNGKLFTFGDGT FGALGHGDRKSVSSPKELQSLNGLKTIKVACGVWHTAAIVEVMSQSGSNISSRKLFTWGDGDKHRLGHGNKDAYLLPTCVSSLIDYNFQQLACGHTMTVA LTTSGHVFTMGGSAYGQLGNPSSNGKIPCLVQDRLVGEFVEEISCGAYHTAVLTSRSEVFTWGRGANGQLGHGDTEDRKLPTLVEALKERHVKNLSCGAN FTSSICIHKWVSGADQSVCSGCRQAFGFTRKRHNCYNCGLVHCHNCSSKKAMKAALAPTPGKPHRVCDSCYAKLKAAESGNTSAINRKTTVPRRSMDIRE KMERGEPRFSRILLSPTTEPIKYLEIKSGKQGAQSEAASIVRASQVPSLLPLKDVAFPSSPSTLQNAWKPAPPIVPQLTVNSSQPAANSRPSSPYSRRPS PPRSASPGFSRGVIDSLKKTNEIFKQDMTKMQNQIKTLKKKCDNQELEIHNLENRAKGAAKLAAAESSKSNIAMEFAKSITKELKEMMQQLPPEGRETDT LKAIDSKIEAFLEKIRASESSSLPESVGSDYQNASASSPLTSDSSNLLEKRMEGQTDTVRATAMSRTDGSVPEESSRSSVSHLTEAVPRESSENESRTPT ASIKRTESQKEIIEQFEPGVYVTVILRPNGVKIFKRVKFSKRRFQEQQAEVWWKENKDRLLKKYSPPTINVSLVGGPSTPVGSSSTPAPTEVNEAGPPET

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14368			Regulator of chromosome conden...		Potri.008G167500 [exp]	0	1
AT2G25050			Actin-binding FH2 (Formin Homo...		Potri.018G019600 [exp]	1.41	0.8634
AT5G09790		PDE336, SDG15, ...	SETDOMAIN GROUP 15, PIGMENT DE...		Potri.007G109900 [exp]	3.74	0.8315
AT1G08190		ZIP2, ATVPS41, ...	ZIGZAG SUPPRESSOR 2, vacuolar ...		Potri.001G212700 [exp]	19.23	0.7893
AT5G27220			Frigida-like protein (.1)		Potri.005G044200 [exp]	19.74	0.8191
AT5G18820		Cpn60alpha2, EM...	embryo defective 3007, chapero...		Potri.015G123200 [exp]	32.40	0.8004
AT3G54650		FBL17	RNI-like superfamily protein (...		Potri.005G218400 [exp]	34.87	0.8087
AT3G51470			Protein phosphatase 2C family ...		Potri.005G102500 [exp]	37.74	0.8158
AT5G40250			RING/U-box superfamily protein...		Potri.012G078200 [exp]	56.99	0.8034
AT4G19020		CMT2	chromomethylase 2 (.1)		Potri.003G100000 [exp]	59.02	0.7965
AT2G34970			Trimeric LpxA-like enzyme (.1)		Potri.005G045200 [exp]	60.59	0.7902

Compare expression of checked genes

Potri.008G167500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.