Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23280 501 / 8e-176 XBAT35 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) AT4G14365 334 / 2e-111 XBAT34 XB3 ortholog 4 in Arabidopsis thaliana (.1) AT4G35450 73 / 6e-14 AKR2A, AFT, AKR2 ankyrin repeat-containing protein 2 (.1.2.3.4.5) AT2G17390 70 / 9e-13 AKR2B ankyrin repeat-containing 2B (.1) AT2G38195 53 / 2e-07 RING/U-box superfamily protein (.1.2) AT5G19080 53 / 3e-07 RING/U-box superfamily protein (.1) AT5G12320 50 / 3e-07 ankyrin repeat family protein (.1) AT1G63900 52 / 4e-07 DAL1 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) AT3G06140 52 / 4e-07 RING/U-box superfamily protein (.1) AT2G38220 51 / 1e-06 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G070750 [exp] 746 / 0 AT3G23280 425 / 4e-146 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.010G070800 [exp] 716 / 0 AT3G23280 502 / 2e-176 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.005G225300 [exp] 437 / 5e-150 AT3G23280 355 / 2e-118 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.018G011300 [exp] 109 / 6e-27 AT3G23280 105 / 6e-26 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.004G210000 [exp] 68 / 4e-12 AT2G17390 418 / 1e-146 ankyrin repeat-containing 2B (.1) Potri.004G210100 [exp] 68 / 4e-12 AT2G17390 430 / 3e-151 ankyrin repeat-containing 2B (.1) Potri.009G070700 [exp] 56 / 3e-09 AT5G12320 197 / 6e-66 ankyrin repeat family protein (.1) Potri.013G062000 [exp] 56 / 5e-08 AT2G03430 94 / 2e-21 Ankyrin repeat family protein (.1) Potri.001G333600 [exp] 54 / 2e-07 AT5G14230 975 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009035 [exp] 548 / 0 AT3G23280 524 / 0.0 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Lus10009674 [exp] 515 / 2e-180 AT3G23280 499 / 6e-175 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Lus10033896 [exp] 299 / 8e-97 AT3G23280 294 / 7e-96 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Lus10033895 [exp] 135 / 1e-33 AT1G30690 218 / 1e-62 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10003551 [exp] 109 / 3e-27 AT3G23280 115 / 5e-30 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Lus10013859 [exp] 69 / 2e-12 AT2G17390 427 / 1e-150 ankyrin repeat-containing 2B (.1) Lus10020272 [exp] 67 / 1e-11 AT5G13530 97 / 9e-21 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10002621 [exp] 66 / 2e-11 AT5G13530 99 / 6e-22 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10001605 [exp] 66 / 5e-11 AT4G38130 833 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Lus10026575 [exp] 61 / 9e-10 AT2G17390 427 / 2e-150 ankyrin repeat-containing 2B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF13857 [poplar] [flax] Ank_5 Ankyrin repeats (many copies) CL0229 [poplar] [flax] RING PF13920 [poplar] [flax] zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.008G167600.2 pacid=42805995 polypeptide=Potri.008G167600.2.p locus=Potri.008G167600 ID=Potri.008G167600.2.v4.1 annot-version=v4.1 ATGGGGCAACAGCAATCGAAGGACGAGTTGCTGTACCAGCAAGTGAATTACGGAAATATAGGAGGCATCAAGACTCTTTGCAGCCAAGGCGCTGGCCTCG AGTGGATTGATAAAGAGGGGAAAACACCACTGATATTGGCGTGTTTGAATCCTCAACTTTTTGATGTGGCTCAAACTTTGATTGAGCTCGGTGCTAATGT CGATGCTTATCGCCCCGGTCGTAATGCGGGAACTCCCTTGCATCATGCGGCGAAAAGAGGTCTTGAAAATACCGTGAAGTTGCTTCTTTCACGTGGAGCG AATGCATTAGTGACGAATGATGATTGTCAAACTCCTCTACAAGTTGCTAGGGCGAAGGGGCACAGCATTGTTGTTCGTGCAATTGAGAGTCATATTTGTC TATTCTCTGGTTGGCTGCGGGAGTTTTATGGGCCTGGATTTCTAGAAGTATTGGCACCTCGGTTGGTTTCGAGAGACGTATGGGTTGTCGTTTTACCTAC TGGTTCCCGTAATCCTAGAAGGCCTTACAAATTGGAGCTTGCCATTTATTCTAGATTGCAGGATGCACAACCACGGACTATTGTCGCACTGTGGAAAGCA AATCTGGAAGAAATGAAGTTTCACCACTCTGATCCATCTGTGATGATTGTTGATAACTCCACCACCTCAAGAGGCAGGAGGCGGAGACGAGCGAGGTGTA GGTCCCTAAATGTTAGGCAAACGCAAATTAAACTTGCACCTGCAAATGAAAGCGACAAGCAACAGCTTCAGTGGTTTTGTGATGCATGTAAAGGAATACA GCAGGTAATGCATCCTCCAGCATTTCTGCATAATTCTCAGGCTCCAGCTGTTCAAGCAACTGCCCCACCATCTGCTGAAGATATAGAGATAGCAATGGCA ATGAATGCCTACATCCAGTCTGCAGCAGAGAGACCTATTTTTGACCCCCACTCTAGCGCTGGGGCAAGTTCATCCACCAGCTGGAGTTACCCTGTGAATA CTGGCAGTCAAGTTGCTCTGGAAACGCCAGCAGCACCTCCTCCAAAAGTAACTATCAGTGAATTGGCACTGCATGAAACTGGAGCTACCAGCAGTTCAAC TCAGCAAACCAAGATCCAGAATAGCAGCATCGCTGATGTCCAGACAGCAACTGATGCCCAAGATTCAGTCCCATCAGCTCCACCCATTGTAGATGAGATT GTAGAAGACGGTCCCATTCACTACCCATCAATTGATTCCAGCCCCATTGATACTTCTTCCCTGTCTGTTGAGAACTTACCAGAAAACACAGGTGAAAAGA GAGAAGATGGAGGTTCTTCATCATGTGTAATATGTTTAGATGCTCTGGTTGAGGGCGCTTGCATTCCATGTGGCCACATGGCTGGATGCATGTCTTGTTT GAAGGAAATCAAAGCCAAGAAATGGGGTTGCCCTGTGTGTCGTGCCAAGATTGACCAGGTTGTAAGGCTCTATGCTGTTTGA
AA sequence Show only first row Show all	>Potri.008G167600.2 pacid=42805995 polypeptide=Potri.008G167600.2.p locus=Potri.008G167600 ID=Potri.008G167600.2.v4.1 annot-version=v4.1 MGQQQSKDELLYQQVNYGNIGGIKTLCSQGAGLEWIDKEGKTPLILACLNPQLFDVAQTLIELGANVDAYRPGRNAGTPLHHAAKRGLENTVKLLLSRGA NALVTNDDCQTPLQVARAKGHSIVVRAIESHICLFSGWLREFYGPGFLEVLAPRLVSRDVWVVVLPTGSRNPRRPYKLELAIYSRLQDAQPRTIVALWKA NLEEMKFHHSDPSVMIVDNSTTSRGRRRRRARCRSLNVRQTQIKLAPANESDKQQLQWFCDACKGIQQVMHPPAFLHNSQAPAVQATAPPSAEDIEIAMA MNAYIQSAAERPIFDPHSSAGASSSTSWSYPVNTGSQVALETPAAPPPKVTISELALHETGATSSSTQQTKIQNSSIADVQTATDAQDSVPSAPPIVDEI VEDGPIHYPSIDSSPIDTSSLSVENLPENTGEKREDGGSSSCVICLDALVEGACIPCGHMAGCMSCLKEIKAKKWGCPVCRAKIDQVVRLYAV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Potri.008G167600 [exp]	0	1
AT4G21790		ATTOM1, TOM1	tobamovirus multiplication 1 (...		Potri.011G001000 [exp]	1.41	0.8207	TOM1.1
AT3G61600		ATPOB1	POZ/BTB containin G-protein 1 ...		Potri.014G093700 [exp]	1.41	0.8317	ATPOB1.1
AT1G32100		ATPRR1	pinoresinol reductase 1 (.1)		Potri.001G133200 [exp]	8.00	0.7543	PCBERp5
AT2G43940		ATHOL3, HOL3	HARMLESS TO OZONE LAYER 3, S-a...		Potri.017G007000 [exp]	9.38	0.7919
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Potri.011G154600 [exp]	10.95	0.7793
AT1G64850			Calcium-binding EF hand family...		Potri.013G072600 [exp]	13.41	0.7902
AT5G65380			MATE efflux family protein (.1...		Potri.005G160700 [exp]	13.74	0.8147
AT4G13010			Oxidoreductase, zinc-binding d...		Potri.001G343000 [exp]	14.14	0.8090
AT5G56180		ATARP8	actin-related protein 8 (.1.2)		Potri.001G471400 [exp]	15.00	0.7651	Pt-ARP8.1
AT4G01280	MYB		Homeodomain-like superfamily p...		Potri.014G089300 [exp]	16.61	0.7838

Compare expression of checked genes

Potri.008G167600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.