Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43310 890 / 0 COP1-interacting protein-related (.1.2.3.4) AT4G27430 254 / 2e-69 CIP7 COP1-interacting protein 7 (.1.2) AT1G61100 233 / 2e-63 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2) AT3G14172 158 / 1e-38 unknown protein AT1G72410 130 / 4e-30 COP1-interacting protein-related (.1.2) AT1G17360 129 / 6e-30 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G070200 [exp] 2032 / 0 AT5G43310 892 / 0.0 COP1-interacting protein-related (.1.2.3.4) Potri.001G403700 [exp] 267 / 3e-73 AT4G27430 366 / 6e-109 COP1-interacting protein 7 (.1.2) Potri.011G046900 [exp] 258 / 2e-71 AT1G61100 484 / 6e-158 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2) Potri.011G122900 [exp] 260 / 5e-71 AT4G27430 649 / 0.0 COP1-interacting protein 7 (.1.2) Potri.004G038300 [exp] 251 / 9e-69 AT1G61100 462 / 1e-149 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2) Potri.001G164900 [exp] 162 / 7e-40 AT3G14172 521 / 1e-161 unknown protein Potri.003G070400 [exp] 153 / 3e-37 AT3G14172 544 / 3e-170 unknown protein Potri.013G091900 [exp] 91 / 5e-18 AT3G14172 122 / 7e-28 unknown protein Potri.019G064000 [exp] 88 / 4e-17 AT3G14172 99 / 8e-21 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011809 [exp] 1127 / 0 AT5G43310 839 / 0.0 COP1-interacting protein-related (.1.2.3.4) Lus10021172 [exp] 1118 / 0 AT5G43310 834 / 0.0 COP1-interacting protein-related (.1.2.3.4) Lus10032660 [exp] 259 / 1e-70 AT4G21760 525 / 6e-175 beta-glucosidase 47 (.1) Lus10011217 [exp] 242 / 2e-66 AT1G61100 475 / 5e-156 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2) Lus10043092 [exp] 243 / 9e-66 AT4G27430 540 / 2e-175 COP1-interacting protein 7 (.1.2) Lus10018471 [exp] 230 / 1e-62 AT1G61100 474 / 1e-155 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2) Lus10013178 [exp] 171 / 2e-42 AT3G28860 889 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10008140 [exp] 164 / 1e-40 AT1G72410 585 / 0.0 COP1-interacting protein-related (.1.2) Lus10000225 [exp] 112 / 2e-26 AT4G21760 189 / 1e-55 beta-glucosidase 47 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G168300.8 pacid=42807609 polypeptide=Potri.008G168300.8.p locus=Potri.008G168300 ID=Potri.008G168300.8.v4.1 annot-version=v4.1 ATGAAGTCTTCAACTCGGCTTGACTCGGCCGTTTTTCAACTCACTCCAACTCGAACCAGGTGTGATTTGATTATATGTGTAAATGGGAAGATAGAGAAAG TAGCTTCTGGGTTGGTACAGCCATTTCTTGACCACTTGAAAACTGCTCAAGATCAAGTGGCCAAGGGGGGCTACTCAATAATTCTTGAGCCTGGAAGTGA TGCAACGTGGTTCACGAAAGGAACAGTTGAGAGATTTGTTCGCTTCGTGAGTACACCAGAGGTGTTGGAACGGGTTTACTATTTAGAATCTGAGATCTCG CAGATCGAGAAGGGAATTGCAATTCAAAGCAACAATGATACGGGGTTGAGCTCAGTAGAAGATCATCAAGCAAAACCTGTAGAGCGCATTGAAGGTAGCA AGCCTCTGACAGATTCTAGTGAGGAAAAAGCCATTGTCCTTTATAAGCCTGGCTCAGATCCACATGAAGCAGATGGGTCGACTGTGCAGGAAGGAAATTC CAAGGTTCAGCTTATGAAAGCTCTGGAGACACGAAAAACTTTGCTGCAGAAAGAGCAGGGCATGGCCTTTGCACGTGCTGTGGCTGCTGGTTTTGACATT GATCACATGGCACATTTGATATCATTTGCTGAAAGTTTTGGAGCCTTACGCTTGATGGATGCCTGTGTCAGATTCATGGAATTATGGAAAAGAAAGCATG AAACTGGCCAGTGGGTTGAGATTGAAGGAGCTGAAGCAATGTCTAGCAGGTCTGACTTTTCTTCCATGAATGCGTCGGGCATTGTTCTTTCTAATACAAT AAACAAGCAGTGGCCTGAAACTCCTGATAGTAAAAGGAAAGCTGGTGCTGACCCAAGTGCAGGTATGAACTCAAAATATGAGCGGCCTCCAACAGATCAA CAACCATCACCAGGCCAGCAGGAGTATTTTCAAGGCCAGTTTCCACATCCTATGTTTCCTCCTTGGCCCATTCATTCTCCACCTGGAGCAGTGCCTGTCT TTCCAGGGTATCCCATGCAAGGCATTCCTTACTACCAGAATTATCCAGGAAATAGCCCAGTTTTTCAGCCACCATATTCATCAGGGGATGATCCTAGAAT CAATGCTGGTCAAAGAATGAGTCACAGAAGGCATTCAATGGATAGCAATACTGAACCTGAAGCTTGGGAAGTGGATGCTTTGAGAACAAGATCTCAGGAT GAGACAGAAGAGAAGGAAACTTCAGGAGGTCGAGAACCTGGGAGGAAGGGAAGTCGTTCAGGTAAAAGACAATCAGGTACAGTTGTTATTCGGAACATCA ACTACATTACTTCAAAGAGACAGGAGGCATCTGGTAGTGAATCTCAATCAGCTTCTGGTTCTGAAAATGACGAGGAAGATGAAGTTTTATTGAACACCAC TCCGAATTCCAAGCATAGGAACTCTCTGAGATCCTCAAAAAGGAAGGGAAGCCATAAAAAATCTGTGGATAAACTGAACTCGTCAGATGTGGCTAGAACA TCTTATGGGAAGGAGGATGATGGTGAACACTGGAAAGCATTTCAAAATTATTTGCTAAAAGATGCTGATGAAGCTGAACGTTCTGTTGATCAAGGCATGT TTGCAATGGAAAAGAATGTTCGAGCAAAAAGGCGACAAAATACAATGGGTGATGATCCCTTAGTTATTGATGGACGAGATCCAGGTGATATTCAAGAAGG GGATGTGACAGATATGCAGAAAATTAGTGGAAACTGGACCCGCATGACTAATGCATCAAAAGATGAATTGTTGATATCAAGAAAAATGGGCGAGCCTAAT GATGGTACAGGGTTTGTAAATGGTCAAATGGATCTACAGTCTGTGGATATAGATGGCAGGAGAGGTCGGTATAGGATGAATGCAAATGATGATTTTGTAA TTCATGGACGAGAAAACAAGTCAGGTTATAGAAGTTCATCATCAGATCCACTAGCTATTAATGGTTTTGAGACTGCAAAAGGTGATCTGGACAGGAGATC ATCCAACAATATGGATGACGATTCATATGTAGTTTCACTACGGTCAACATCACTAGATCAAGTTGTAACTGAGGGAAGAAACATTATCGATGTGGATTCT GAGTTCCCATCAACAGCTCAGAAGACAGAAAACTTATCTAACAGGGTTGGAAGCCAAGTCAAATATGAACCAGATGATTTAAGTTTGATGCCTGAACGTG GGACAGAAAAGGGATCAATCGGTTATGATCCTGCTTTAGATTATGATATGCAGGCCTCACTACATAAGAAAAATAAGGTGGTAACTGGGCAAGGCTCTAC GAAGTCAGACAAGTACCGGAAACCAAAACTCATTCCAGATACTTCAGACAGGAAGAAGACGGTAGGACCAATAAGGAAAGGAAAGCCTTCAAAGTTGAGT CCTTTGGATGAAGCAAGAGCCCGTGCTGAGAAGCTAAGAGCATTTAAAGCTGATCTCCAGAAAATGAAGAAAGAGAAGGAAGAAGAAGAGATTAAACGAC TGGAAGCTTTGAAGTTAGAGAGACAAAAGAGAATTGCTGCTAGAGGCAGTTCCACTACTGCTCTGCCAGCATTGCAGCAAACCAGAAAACAATTGCCAAC AAAACTTTCCCCAAGCTCTCACAGAGGATCAAAATTCAGTGATTCAGAGCCTGGATCCTTATCACCTCTGCAAAGGTTCTCCATCAAAAGTGTTTCCGCA GGATCGGGTGATTCTCGGAAAGTCTCTAGGTCCAGCAAATTGAGCACTGGACCTAGCACAGCTGGAAATAGATTAACTCTGTCATTATCGTCATTGTCTG AACCAAAGAATGAGAAAAGTGGTGTAACATCTGATTCAAAGGCATCGATGGCCAGGATTAGAAGATTATCAGAGCCAAAAGTAAGTAGCAGCAATCATGC TTCAATTAAACCACGAAAAACTGGACCAGTACTGAAACCAAAATTATCCAGTGGGACTGAGAGCAAGAAAATATCTGCCATCATGAACCATGATAAAAGC AAGGCAGCATCTCTTCCAGAACTGAAAACCAAAACCACTAAAGGGCATGATTTTGCCCCTGGCAATTCAGCAGCAAAAGAAATTCCACAGAAGATGCACG AAAGCAAGGCCATTGCAACTTCGGAGAGCAATGAACTGAAACAGAATGGAAACAAAATTTCACATCATAGTGATGAGGATGACAACCCAATAATTGAGAA GACTGTTGTTGTGCTCGAGTGTGAGAAGCCCTCCATTCCCTATGTACACACATCAGAGCACAAAATAGAAGTACAAGATGGATACTCTAATAACTATAAA TTAGGGGAGAAAACAGAGACTGTGGTGGATTATGCTGCTATTCGAGCACCAGTTTCACCACTTACCATGGATGGGATTGGTAGAAAACACACTGAGCACC AGTTACCAAAGCACCCTGGGCTTCATGAGGCTGCATCTGTACATGCAAGTCATGCAGAGAAGGAATCACCAAAGCTTACAAGCACCATTGTTGAGAAGCC CTACCATGCCCCTTATGCTCGGGTCTCATCTTTGGAAGATCCATGTACTGGAAATTCCGAATACGGCAAAGCACCTCCATCAAGCGTAACGGATTCAGCA GGCACAGAGACCATTAAAGCTCACGTGTCTGGTTTAAAAAGCTTGAAACTAGAAGAGATCCCTGAAGCATTGGAGAAGCCTCATACGAAGGAATCATCGA AAGGGTTTCGACGATTGCTGAAGTTTGGAAGAAAGAGTCATACTACAGGTGAACGTAATGCAGAAATAAATCATGTCAGTTTGAATGGGTCCCAGACAGA TGATAATGCTGCCTCTTCCAGTGAAGTTCATACATTGAAGAATCTTATCTCTCAAGATGAAACCCTCACTGCTGGCTCCAATCAAAAGACTTCTCGTCAC TTCTCATTGCTATCGCCCTTCCGAAGTAAGACAGGTGAAAAGAAGTTGACTACTTGA
AA sequence Show only first row Show all	>Potri.008G168300.8 pacid=42807609 polypeptide=Potri.008G168300.8.p locus=Potri.008G168300 ID=Potri.008G168300.8.v4.1 annot-version=v4.1 MKSSTRLDSAVFQLTPTRTRCDLIICVNGKIEKVASGLVQPFLDHLKTAQDQVAKGGYSIILEPGSDATWFTKGTVERFVRFVSTPEVLERVYYLESEIS QIEKGIAIQSNNDTGLSSVEDHQAKPVERIEGSKPLTDSSEEKAIVLYKPGSDPHEADGSTVQEGNSKVQLMKALETRKTLLQKEQGMAFARAVAAGFDI DHMAHLISFAESFGALRLMDACVRFMELWKRKHETGQWVEIEGAEAMSSRSDFSSMNASGIVLSNTINKQWPETPDSKRKAGADPSAGMNSKYERPPTDQ QPSPGQQEYFQGQFPHPMFPPWPIHSPPGAVPVFPGYPMQGIPYYQNYPGNSPVFQPPYSSGDDPRINAGQRMSHRRHSMDSNTEPEAWEVDALRTRSQD ETEEKETSGGREPGRKGSRSGKRQSGTVVIRNINYITSKRQEASGSESQSASGSENDEEDEVLLNTTPNSKHRNSLRSSKRKGSHKKSVDKLNSSDVART SYGKEDDGEHWKAFQNYLLKDADEAERSVDQGMFAMEKNVRAKRRQNTMGDDPLVIDGRDPGDIQEGDVTDMQKISGNWTRMTNASKDELLISRKMGEPN DGTGFVNGQMDLQSVDIDGRRGRYRMNANDDFVIHGRENKSGYRSSSSDPLAINGFETAKGDLDRRSSNNMDDDSYVVSLRSTSLDQVVTEGRNIIDVDS EFPSTAQKTENLSNRVGSQVKYEPDDLSLMPERGTEKGSIGYDPALDYDMQASLHKKNKVVTGQGSTKSDKYRKPKLIPDTSDRKKTVGPIRKGKPSKLS PLDEARARAEKLRAFKADLQKMKKEKEEEEIKRLEALKLERQKRIAARGSSTTALPALQQTRKQLPTKLSPSSHRGSKFSDSEPGSLSPLQRFSIKSVSA GSGDSRKVSRSSKLSTGPSTAGNRLTLSLSSLSEPKNEKSGVTSDSKASMARIRRLSEPKVSSSNHASIKPRKTGPVLKPKLSSGTESKKISAIMNHDKS KAASLPELKTKTTKGHDFAPGNSAAKEIPQKMHESKAIATSESNELKQNGNKISHHSDEDDNPIIEKTVVVLECEKPSIPYVHTSEHKIEVQDGYSNNYK LGEKTETVVDYAAIRAPVSPLTMDGIGRKHTEHQLPKHPGLHEAASVHASHAEKESPKLTSTIVEKPYHAPYARVSSLEDPCTGNSEYGKAPPSSVTDSA GTETIKAHVSGLKSLKLEEIPEALEKPHTKESSKGFRRLLKFGRKSHTTGERNAEINHVSLNGSQTDDNAASSSEVHTLKNLISQDETLTAGSNQKTSRH FSLLSPFRSKTGEKKLTT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G43310			COP1-interacting protein-relat...		Potri.008G168300 [exp]	0	1
AT1G73460			Protein kinase superfamily pro...		Potri.015G033400 [exp]	1.73	0.7974
AT3G61690			nucleotidyltransferases (.1)		Potri.015G020400 [exp]	4.89	0.7788
AT5G19420			Regulator of chromosome conden...		Potri.009G071800 [exp]	5.47	0.7618
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Potri.009G093500 [exp]	7.93	0.7486
AT3G19510	HD	HAT3.1	Homeodomain-like protein with ...		Potri.009G093000 [exp]	11.48	0.7705
AT3G48430	JUMONJI	JMJ12, REF6	Jumonji domain-containing prot...		Potri.015G089000 [exp]	20.78	0.7606
AT5G01400		ESP4	ENHANCED SILENCING PHENOTYPE 4...		Potri.016G116600 [exp]	23.62	0.7708
AT1G73660			protein tyrosine kinase family...		Potri.012G048400 [exp]	40.62	0.7238
AT1G26500			Pentatricopeptide repeat (PPR)...		Potri.016G086100 [exp]	43.08	0.7411
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Potri.019G052100 [exp]	44.98	0.6592	Pt-XPO1.1

Compare expression of checked genes

Potri.008G168300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.