Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23360 242 / 9e-80 Protein phosphatase 2C family protein (.1) AT4G28400 137 / 2e-38 Protein phosphatase 2C family protein (.1) AT2G20630 133 / 3e-37 PIA1 PP2C induced by AVRRPM1 (.1.2) AT3G15260 129 / 1e-35 Protein phosphatase 2C family protein (.1.2) AT1G78200 105 / 2e-26 Protein phosphatase 2C family protein (.1.2) AT1G22280 104 / 3e-26 PAPP2C phytochrome-associated protein phosphatase type 2C (.1.2.3) AT5G24940 102 / 2e-24 Protein phosphatase 2C family protein (.1) AT4G31750 97 / 3e-23 WIN2 HOPW1-1-interacting 2 (.1) AT5G10740 97 / 9e-23 Protein phosphatase 2C family protein (.1) AT1G34750 95 / 1e-22 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G070100 [exp] 454 / 5e-163 AT3G23360 224 / 7e-73 Protein phosphatase 2C family protein (.1) Potri.017G013300 [exp] 154 / 5e-45 AT4G28400 439 / 2e-157 Protein phosphatase 2C family protein (.1) Potri.001G398100 [exp] 144 / 2e-41 AT3G15260 469 / 7e-169 Protein phosphatase 2C family protein (.1.2) Potri.011G116700 [exp] 144 / 2e-41 AT3G15260 439 / 5e-157 Protein phosphatase 2C family protein (.1.2) Potri.018G150800 [exp] 119 / 1e-31 AT4G28400 340 / 1e-117 Protein phosphatase 2C family protein (.1) Potri.005G164600 [exp] 115 / 3e-30 AT1G34750 450 / 1e-161 Protein phosphatase 2C family protein (.1) Potri.006G081400 [exp] 115 / 4e-30 AT4G28400 348 / 3e-121 Protein phosphatase 2C family protein (.1) Potri.002G097200 [exp] 113 / 2e-29 AT1G34750 449 / 2e-161 Protein phosphatase 2C family protein (.1) Potri.006G267600 [exp] 98 / 1e-23 AT4G31750 535 / 0.0 HOPW1-1-interacting 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011808 [exp] 311 / 2e-106 AT3G23360 227 / 6e-74 Protein phosphatase 2C family protein (.1) Lus10021171 [exp] 303 / 2e-103 AT3G23360 220 / 4e-71 Protein phosphatase 2C family protein (.1) Lus10018618 [exp] 141 / 4e-40 AT4G28400 427 / 2e-152 Protein phosphatase 2C family protein (.1) Lus10039853 [exp] 141 / 5e-40 AT4G28400 427 / 2e-152 Protein phosphatase 2C family protein (.1) Lus10008556 [exp] 117 / 5e-31 AT4G28400 352 / 1e-122 Protein phosphatase 2C family protein (.1) Lus10028094 [exp] 116 / 3e-30 AT4G28400 360 / 8e-126 Protein phosphatase 2C family protein (.1) Lus10040565 [exp] 115 / 4e-30 AT4G28400 359 / 1e-125 Protein phosphatase 2C family protein (.1) Lus10020924 [exp] 114 / 7e-30 AT1G34750 438 / 7e-157 Protein phosphatase 2C family protein (.1) Lus10038455 [exp] 101 / 4e-25 AT2G34740 327 / 1e-112 Protein phosphatase 2C family protein (.1.2) Lus10026239 [exp] 99 / 4e-24 AT4G31750 454 / 3e-163 HOPW1-1-interacting 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [poplar] [flax] PP2C PF00481 [poplar] [flax] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Potri.008G168400.1 pacid=42807349 polypeptide=Potri.008G168400.1.p locus=Potri.008G168400 ID=Potri.008G168400.1.v4.1 annot-version=v4.1 ATGCATAAAGCAGTCTCTATCATCAGTTTTCCAGGGAGAAACATGGGACTCAAAGATCTTCATCGAAAGCTCAAGGCATTTCGGCTAAAACGCCCTCTTA TTGGAAATTGGCGCAAGAAAAGAACGGCTAGTATGGCAAAGAAGGCTTCATGGATGATGCCAATAACGCATGGATATCATGTCGTGGAGGATCAGTCGTT TAAAGGTGGTGCAGATGAGTCAGACTCTGACTCTGTAGTGGTTCAGAGAGAGCAAATAGCGGAGCTGGAGTTGTGGTATTTCGGAATTTCCGATGCACAA ATTGGACATGGAGTCAGCAACTATATGCAATCCCACCTGTTTTATAGGAACCCCAGCGAGTCTCAGATAACGACAAAGAGTAAGGAGATGATGAGAAAAG CGTATCTTGCTGCAAGAGCAAAGATCAGGGAGACACAGAAGTCAGTTGAGGCATTGAAAGCAGGTGCGGCATCTGTTATGGTGATCAACAGAGAGAAGCT TGTGACAGCTAACATGGGTGACTTTAGAGTTGTAGTGTGCAGAGACGGCGTGGCTCATCAGATGAAAAGCAAGCACCAGCAAACAGCCACAAGGCATTGG TCTCACAGGCTTTTTTCCGGACGCATGTTATCGTGGAAATCCAGCGATGCAGCAAGCACCAAGAAATCTAAAGGCTCCGAGCTTGCTGTTGGCGCTGAAA GGATTGACTCTGATACTGAGTTTGTCATCATAGCAAGCACAGGCATATGGGAGACAATGAATAATCAAGAAGCAGTGCATCTCATCGGACACTTGGAGGA TCCCCAAGAGGCTGCCGAATGCTTGGCGAAGGAGGCTTTAACTAGAATGAGCAAAAGCAACATTTCATGCATTGTTATTCGCTTTGATTAA
AA sequence Show only first row Show all	>Potri.008G168400.1 pacid=42807349 polypeptide=Potri.008G168400.1.p locus=Potri.008G168400 ID=Potri.008G168400.1.v4.1 annot-version=v4.1 MHKAVSIISFPGRNMGLKDLHRKLKAFRLKRPLIGNWRKKRTASMAKKASWMMPITHGYHVVEDQSFKGGADESDSDSVVVQREQIAELELWYFGISDAQ IGHGVSNYMQSHLFYRNPSESQITTKSKEMMRKAYLAARAKIRETQKSVEALKAGAASVMVINREKLVTANMGDFRVVVCRDGVAHQMKSKHQQTATRHW SHRLFSGRMLSWKSSDAASTKKSKGSELAVGAERIDSDTEFVIIASTGIWETMNNQEAVHLIGHLEDPQEAAECLAKEALTRMSKSNISCIVIRFD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23360			Protein phosphatase 2C family ...		Potri.008G168400 [exp]	0	1
AT3G55640			Mitochondrial substrate carrie...		Potri.010G197400 [exp]	4.00	0.8444
AT3G46580		MBD05, MDB5, MD...	METHYL-CPG-BINDING DOMAIN PROT...		Potri.009G031100 [exp]	4.69	0.8321	MBD5.2,MBD904
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.002G121400 [exp]	10.58	0.8594	Pt-IFS1.51
AT5G49040			Disease resistance-responsive ...		Potri.006G195300 [exp]	11.48	0.8547
AT3G08505	C3HZnF		zinc finger (CCCH-type/C3HC4-t...		Potri.004G134400 [exp]	12.16	0.8141
AT5G38210			Protein kinase family protein ...		Potri.017G118250 [exp]	25.45	0.8508
AT2G30080		ATZIP6, ZIP6	ZIP metal ion transporter fami...		Potri.001G279300 [exp]	33.58	0.8084	ZIP6.3
AT3G54300		ATVAMP727	vesicle-associated membrane pr...		Potri.010G239900 [exp]	36.67	0.8504	Pt-VAMP727.2
AT5G46720			AIG2-like (avirulence induced ...		Potri.003G092600 [exp]	44.69	0.8185
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Potri.010G229900 [exp]	66.93	0.8233	Pt-NAC2.1,NAC049

Compare expression of checked genes

Potri.008G168400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.