Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14330 915 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G21270 136 / 1e-32 KATAP, ATK1 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A PROTEIN, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A, kinesin 1 (.1) AT4G05190 132 / 2e-31 ATK5 kinesin 5 (.1) AT1G72250 125 / 4e-29 Di-glucose binding protein with Kinesin motor domain (.1.2) AT2G37420 124 / 1e-28 ATP binding microtubule motor family protein (.1) AT2G28620 121 / 8e-28 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G45850 121 / 9e-28 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G36200 121 / 1e-27 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT4G27180 120 / 1e-27 KATB, ATK2 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA B, kinesin 2 (.1) AT2G47500 119 / 5e-27 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G069400 [exp] 1449 / 0 AT4G14330 863 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G031600 [exp] 129 / 3e-30 AT4G21270 1076 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A PROTEIN, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A, kinesin 1 (.1) Potri.006G082900 [exp] 128 / 6e-30 AT2G37420 1219 / 0.0 ATP binding microtubule motor family protein (.1) Potri.011G031200 [exp] 127 / 8e-30 AT4G21270 1109 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A PROTEIN, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A, kinesin 1 (.1) Potri.002G110600 [exp] 127 / 9e-30 AT2G22610 1057 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.001G233700 [exp] 124 / 1e-28 AT3G45850 1554 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.013G020700 [exp] 121 / 5e-28 AT5G27550 862 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G021100 [exp] 121 / 7e-28 AT2G47500 1051 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.011G140000 [exp] 120 / 2e-27 AT1G72250 1201 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021167 [exp] 763 / 0 AT4G14330 788 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10011804 [exp] 750 / 0 AT4G14330 759 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10025304 [exp] 130 / 1e-30 AT2G37420 1244 / 0.0 ATP binding microtubule motor family protein (.1) Lus10024429 [exp] 129 / 4e-30 AT2G37420 1266 / 0.0 ATP binding microtubule motor family protein (.1) Lus10007629 [exp] 125 / 5e-29 AT4G21270 975 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A PROTEIN, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A, kinesin 1 (.1) Lus10014216 [exp] 124 / 1e-28 AT2G36200 1464 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10018384 [exp] 124 / 1e-28 AT4G21270 989 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A PROTEIN, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A, kinesin 1 (.1) Lus10009073 [exp] 123 / 3e-28 AT3G45850 1019 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10035954 [exp] 122 / 5e-28 AT2G22610 1302 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10035838 [exp] 122 / 5e-28 AT5G54670 1076 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C, kinesin 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Potri.008G169000.1 pacid=42806022 polypeptide=Potri.008G169000.1.p locus=Potri.008G169000 ID=Potri.008G169000.1.v4.1 annot-version=v4.1 ATGGCCCCTACACCCTCTTCTTCTTCTTCTAAATCGAATCATCCACACCTCTTAAAGACACCGCAATCAAAACATAGGTTAAATTTCTCTTCCACAAGAA CCCCAAGTCTTAATCCATCTCCAAACCCTAACTCCACCGTCAAAGAAACCCCTCAAGACCACCCGATCGAAGTAATTAGCAGAATACGAGATTATCCTGA CAAAAAAGAGAAACCCAATTCCATCTTGCAAATAAACCCCGACAATCAAACTCTTCGTGTCCGTGCAGACATTGGGTACCGAGACTTTAGCCTTGATGGG GTCTCTTTTTCTGAAGAAGAAGACCTCGATTCCTTTTACAAGAAGTTCGTGGAGTCGAGGATTACTGGGGTTAAATTGGGTGCAAAATGCACGATAATGA TGTATGGTCCTACTGGTTCTGGGAAAAGTCATACAATGTTTGGCTGCTCGAAGCAGCCAGGCATTGTTTATCGATCTTTGAAGGATATTTTAGGAGGAGG AGAAGAGGGAAGTGAAGGGGGTGATGGGGAGGAGATACGAATTAGCACTTTTGTGCAAGTTACAGTTCTAGAGATTTATAATGAAGAAATTTATGATCTT TTGTCAACTAATAGTGGGGGTGGACTTGGAATCGGGTGGCCTAAGGGCGGCAGTGGATCCAAGGTAAGACTTGAAGTAATGGGAAAGAAGGCAAAAAACG CGACTTTTATTTCTGGAAATGAAGCCGGGAAGATTTCAAAAGAGATCCAGAAAGTTGAGAAGCGAAGGATAATTAAGAGCACGCTTTGCAATGAGCGAAG TTCAAGGAGTCATTGCATGATAATCCTTGATGTTCCCACAGTAGGTGGCCGGCTTATGCTTGTGGATATGGCAGGGTCAGAAAATATTGACCAAGCAGGC CAAAGTGGTTTTGAAGCTAAAATGCAGACAGCAAAGATCAACCAAGGGAATATAGCATTGAAGAGAGTGGTTGAATCTATTGCTAATGGAGATTCTCACG TACCTTTCAGAGATAGCAAGTTGACTATGCTGCTCCAAGATTCTTTTGAAGATGACAAGTCAAAAATTTTGATGATTCTGTGTGCAAGTCCAGACCCGAA AGAAATACACAAGACAATCTGCACGCTTGAATATGGAGCAAAAGCAAAATGTATTGTCCGTGGCCCTCATACACCGATAAAGGATAAAGTTGGTGCTGGA GATTCTTCTGCTGTCATCTTAGGATCAAGGATAGCAGCCATGGACCAGTTTATCTATAAACTACAAATGGAGAGCAAGCTTAGAGAAAAGGAGAGAAATG AAGCTCACAAACAGCTAATGAAGAAAGAAGAAGAAGTTGCTGCACTGAGAGCACTTATTGAAGAGAAGGGGTCTTCAGCAAGTGAGGAGGAGATAAACAT AAAAGTGAGTGAGCGTACAGAAGAACTGAAACTTCAGTTGGAAAAGAAGCTGGATGAGTGTCAAAGAATGGCTGAAGAGTTTGTTGAGTTGGAGCGGAGG AGGATGGAAGAAAAGATACTTCAACAGCAGCAGGAAGTTGAGATGCTGAGAAGGCGCTTGGAAGAAATTGAGTTTGAGCTATGTCATTCAAAGGGTGAAA ACAGTGGTGTGAATGGTCCTAGGGACATTGATGGCAGTGGCTTTGCCAGAAGATTGATGGGGGTTTATGCTGATGAGGACCCTGGGATGGTGAAATCGAT GGATTTAGACATGGGTGATCAAGATGTGTTTGTTCGTGATGTGAAATTGGTTGGCACATCTGCTCACCAATCTAGCAACATTGGAATCCAAAGCTTGTCT GGTTATCCTCATTTAAGTACTTTGAATCAGGTGGTTGATCATGGAGTATTTGCACCAACATATGGTGATAAAGTGTGTCTTAGCACTGTGTTTGAGGAAG AAGAGGTAGAAGAGGAGGAACACAAAGTGGAAGATGAAGAAGTGGAGAAAGAAGTAATAGAGGTGAAGAGGATTGTTGATGTGTCCAGTCCGGTGATCAA TTTTGGTGCTGGCTCCTTGATGTCTTCTCCTCTGAAGTTTGAGGCACTCAATGATGGGTCAGAGGATAGGCACTCAGTTTCAGGGCCAGTAAATGAGCAT GAGAATTCGAAAGATCCAGCCTCTTCGAGACTATTAAGAATCCAGAACATATTTACACTTTGTGGGAACAATAGAGAGCTTTGTCAACAATTCAGAACTC CTCCACCTGCAAAAAAGAGGGTTGCAGATACTGATTCCCAAACACCTCCAATTTTGACTGATGGCGAGGATTATGCTCTCAAGAGTTCAAACAAGGAAAA CTCACCACCGCTACAGAAAAATGTGCCTGTGATGGAATGTAGGAAAAATCTTTCTGATATGATAGCTTCAAAGGAGAATTACAACCCTTTAATAGGAAGT AATGATTCACAGATTGAAGTGCATGTGAAATGGGAAGCTTCTAAAGGAAACAATGGGAAGTTCATCACTACACTTAAGGTTTTGAAGGATGCGACACTTG CTGACCTGCGGAAGCTGATTGAAATCTATCTTGCTGCAGACAATCAAGCATTCACTTTTCTTGTGCTTGGGGATCCTGGTGGAGCACCAGTTCCAAGAGA GAAAGAGTCGACGGTACAGGCCATCAAACTCCCCATTTGCAACAACCAGTCCTACGGCTACTTGGCTTGCTTGCGACCAGCCAAGGGAACCCAAGGTTCG AATCATCTCCCAGCAACCCCTCTTCCATTGACGCCAGTGGAAAATAAACTACCACTGACCCCAATGCCTTGCTTGTCACAACAAGCTGTTGACTTATCTC CCAAACTAGCTGCACACCTGAACTCTACTCCCTTCATCACTCTTCGAAGGCGCTAG
AA sequence Show only first row Show all	>Potri.008G169000.1 pacid=42806022 polypeptide=Potri.008G169000.1.p locus=Potri.008G169000 ID=Potri.008G169000.1.v4.1 annot-version=v4.1 MAPTPSSSSSKSNHPHLLKTPQSKHRLNFSSTRTPSLNPSPNPNSTVKETPQDHPIEVISRIRDYPDKKEKPNSILQINPDNQTLRVRADIGYRDFSLDG VSFSEEEDLDSFYKKFVESRITGVKLGAKCTIMMYGPTGSGKSHTMFGCSKQPGIVYRSLKDILGGGEEGSEGGDGEEIRISTFVQVTVLEIYNEEIYDL LSTNSGGGLGIGWPKGGSGSKVRLEVMGKKAKNATFISGNEAGKISKEIQKVEKRRIIKSTLCNERSSRSHCMIILDVPTVGGRLMLVDMAGSENIDQAG QSGFEAKMQTAKINQGNIALKRVVESIANGDSHVPFRDSKLTMLLQDSFEDDKSKILMILCASPDPKEIHKTICTLEYGAKAKCIVRGPHTPIKDKVGAG DSSAVILGSRIAAMDQFIYKLQMESKLREKERNEAHKQLMKKEEEVAALRALIEEKGSSASEEEINIKVSERTEELKLQLEKKLDECQRMAEEFVELERR RMEEKILQQQQEVEMLRRRLEEIEFELCHSKGENSGVNGPRDIDGSGFARRLMGVYADEDPGMVKSMDLDMGDQDVFVRDVKLVGTSAHQSSNIGIQSLS GYPHLSTLNQVVDHGVFAPTYGDKVCLSTVFEEEEVEEEEHKVEDEEVEKEVIEVKRIVDVSSPVINFGAGSLMSSPLKFEALNDGSEDRHSVSGPVNEH ENSKDPASSRLLRIQNIFTLCGNNRELCQQFRTPPPAKKRVADTDSQTPPILTDGEDYALKSSNKENSPPLQKNVPVMECRKNLSDMIASKENYNPLIGS NDSQIEVHVKWEASKGNNGKFITTLKVLKDATLADLRKLIEIYLAADNQAFTFLVLGDPGGAPVPREKESTVQAIKLPICNNQSYGYLACLRPAKGTQGS NHLPATPLPLTPVENKLPLTPMPCLSQQAVDLSPKLAAHLNSTPFITLRRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14330			P-loop containing nucleoside t...		Potri.008G169000 [exp]	0	1
AT4G14330			P-loop containing nucleoside t...		Potri.010G069400 [exp]	1.00	0.9903
AT3G15550			unknown protein		Potri.003G058600 [exp]	1.41	0.9851
AT5G03870			Glutaredoxin family protein (....		Potri.006G212700 [exp]	1.73	0.9799
AT1G49870			unknown protein		Potri.009G090900 [exp]	2.00	0.9755
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Potri.011G131500 [exp]	2.64	0.9705
AT3G15550			unknown protein		Potri.001G175500 [exp]	4.89	0.9730
AT1G72250			Di-glucose binding protein wit...		Potri.011G140000 [exp]	6.00	0.9663
AT2G33400			unknown protein		Potri.010G067300 [exp]	8.00	0.9686
AT5G15510			TPX2 (targeting protein for Xk...		Potri.004G118700 [exp]	8.66	0.9740
AT1G63100	GRAS		GRAS family transcription fact...		Potri.003G122400 [exp]	8.66	0.9604	GRAS19

Compare expression of checked genes

Potri.008G169000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.