Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14310 814 / 0 Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G069200 [exp] 1361 / 0 AT4G14310 830 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011802 [exp] 920 / 0 AT4G14310 819 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10021166 [exp] 838 / 0 AT4G14310 787 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G169200.4 pacid=42807677 polypeptide=Potri.008G169200.4.p locus=Potri.008G169200 ID=Potri.008G169200.4.v4.1 annot-version=v4.1 ATGTCAGCCTCCTCAGCCCGTCGGCTAAGAGATCGAAATGGCGTCGCCGCCGCCACAGCTGCCCAAAAACCCACCAAAACCGTAACCCTCAACTCAACCT TCTATAATAATAACCGCAATTCAGCCATAAAAGGGTCGCTCCCAGGCAAAGAGAACCCCACCAGGCCCAACTCTCGGGTCCAGAAACCCTCAATCCTGCC AGTACCCCGTGTTGACAAGGCCGCTGTAGGAGATGGTAGCGAAGGGCGTATGCGGTGGTCGACGTCATCGGCGCCAAGAGGTAGGAGTCCAAGCCCATCT GAATTTATTAGGGTATTTAGGGATTCTAGGGTTTGTAAAGGGGAGAGTGATCAACGAGTGGTGTCGAGTGCAGGGAAGAAGAATGGGATTAGGGGTTTGA AAGAGAATGGTGGATTTAGTGTGGAATTGAAGAAAAGGAATGGACTTTGTGAAGGAAATGATTTGAAAATATTAGAAAGTAAAAAGCAACTTTGCGGGCT TAAAGTTTTGAATGATAACTGTAATAAACAAGTTAATTTAAGAAAATCAAGTGAGCTTGATTCAAATTTAGATTCAAAAGCTGCAAATGTTTGTAAATTC GATAAGTTATATGAAGAGAAATCCGAGCCTGAGTTTAAATCTGATAGCTTTAGAGAGTCTAGTGAGAAATCCTCTGTGAAAGGTAAGGTTTTGGAGAACC TGAAAGATAAGGGGTTGAGTGATGAAGGAAGTGGAAGCAAGGTTGGTGTCAAATATCCAAGCAAGCTTCACGATAAGCTCGCTTTTTTAGAAGGAAAAGT GAAGAGGATTGCGTCGGACATTAAGAAGACAAAGGAAATGTTGGATATGAATAACCCTGATGCGTCCAAGGTGATACTATCAGATATTCAAGATAAAATT TCTGGGATTGAGAAGGCAATGGGAAATGTTGCGGGTACTGGAACAGCTGTGGTCGTGGAGAAGAGTGAAAGTGAGAAGGTAGAGGATGTGAAGAGTTCGG TTAAAGGGTTGAATACCGAGGAACTTGAAGAAAGGCTCTTTCCTCATCATAAGTTGCTTAGAAACCGAACATCACTGAAGGCACCTAGAGCAAGTTGTCA AAGTCACGAGTCTGGATGTGAGTTAAAGGTGGGGGAGAAGTTTTCTGGTCCTATTGAAGAGAATCCAAAAGCATTCGAGCTTTTGTATTCCCTTGGTAAA GAGGATAAAAAAGTAACCATGAGAGATGCAAAGGTGGGTCTTGAGTCTTTTGAGGTCCAAGAAATGGGTGATGATTCAGTTTCAGGCAAGCAAGACTCTT CAAACATGTTCAATCTCAAGTGCGAGGACCTTGTTCTTACAACTGACGAAACACTCGATGAGTTTGATGACCAGGAGAATGGAGATACAATCATGATTGG CGAGGAAACTGAAGATACTTGTGTCTATGAGGTGAAAGAAATAGGCACCAAAAATTCTACAGGAGGATGGTTTGTGTCAGAGGGAGAGTCAATTCTTCTT AGTCATGATGATGGGTCCTGCTCTTTTTATGATATTGCAAATTGTGAGGAGAAGGCTGTATACAAGCCCCCAGGAGGAGTCTCACCTAATATATGGAGAG ATTGCTGGATGATTCGTGCACCTGGTGCTGATGGCTGCTCAGGCAGATATGTCGTGGCCGCATCTGCTGGGAATACTCTTGATTCAGGCTTTTGTTCATG GGATTTCTATGCCAAAGATGTGCGAGCTTTTCACATTGAGGATGGAGGAACAACTGCCTCAAGAACAGTACTTGGTCCCTTACCCAACAATACTGCATCT CGGAGAAATGCTTTGTCTAGCATATTGTTACCTGAAACTCGACAATGGTGGTATAAACCTTGTGGACCTCTTATGATCTCTGCTGCCAGCTCTCAAAAAG TAGTCAAAGTACATGATATTCGAGATGGAGAACAAATAATGAAATGGGAGGTGCAGAAACCTGTGCTAGCAATGGATTATTCAAGCCCTTTGCAGTGGAG AAACAGAGGAAAAGTGGTTGTGGCTGAGGCAGAAACAATTTCTGTGTGGGATGTGAACTCTGTTAATCCTCAATCCTTGTTGTCTGTTTCTTTGGCTGGT CGAAAAATCTCAGCTCTTCATGTGATCAACACTGATGCTGAACTGGGTGGTGGGGTTAGGCAAAGAGCAACTTCTGCAGAAGCTGAAGGAAATGATGGTG TGTTTTGCACCCATGATTCTATAAATGTCTTAGACTTTCGCAATCCATCTGGTATAGGCCTTAAGATACCGAAAATAGGTGCCAGTGTGCAATCGGTTTT CAGTCGTGGAGATTCGATTTACATTGGCTGTGCCAATACGAGGTTTGCAGGGAAGAAACATCCTTGTTCCCAGGTGCAACATTTCTCAATGCGCAAGCAA AGGCTAGTCAACACTTACTCTCTGCCAGAATCTAATGCTCAACCACATTACTCAGCTATAACACAGGTTTGGGGGAACTCAAACGTTGTAATGGGAGTTT GTGGATTGGGGCTATTTGCATTTGATGCCTTAAAAGATGACGCACCACAGTCTCTCACTGGTGATATTGGCAGTACTCAAAAGGTCAAGGATGTTATTGG GCCAGATGACTTAGATTCCCCTTCTTTTGATTACTTGGCATCCTGTGCTCTCCTTGTATCAAGAGATCGCCCAGCACTGTGGAAGCGGTTATTGTAG
AA sequence Show only first row Show all	>Potri.008G169200.4 pacid=42807677 polypeptide=Potri.008G169200.4.p locus=Potri.008G169200 ID=Potri.008G169200.4.v4.1 annot-version=v4.1 MSASSARRLRDRNGVAAATAAQKPTKTVTLNSTFYNNNRNSAIKGSLPGKENPTRPNSRVQKPSILPVPRVDKAAVGDGSEGRMRWSTSSAPRGRSPSPS EFIRVFRDSRVCKGESDQRVVSSAGKKNGIRGLKENGGFSVELKKRNGLCEGNDLKILESKKQLCGLKVLNDNCNKQVNLRKSSELDSNLDSKAANVCKF DKLYEEKSEPEFKSDSFRESSEKSSVKGKVLENLKDKGLSDEGSGSKVGVKYPSKLHDKLAFLEGKVKRIASDIKKTKEMLDMNNPDASKVILSDIQDKI SGIEKAMGNVAGTGTAVVVEKSESEKVEDVKSSVKGLNTEELEERLFPHHKLLRNRTSLKAPRASCQSHESGCELKVGEKFSGPIEENPKAFELLYSLGK EDKKVTMRDAKVGLESFEVQEMGDDSVSGKQDSSNMFNLKCEDLVLTTDETLDEFDDQENGDTIMIGEETEDTCVYEVKEIGTKNSTGGWFVSEGESILL SHDDGSCSFYDIANCEEKAVYKPPGGVSPNIWRDCWMIRAPGADGCSGRYVVAASAGNTLDSGFCSWDFYAKDVRAFHIEDGGTTASRTVLGPLPNNTAS RRNALSSILLPETRQWWYKPCGPLMISAASSQKVVKVHDIRDGEQIMKWEVQKPVLAMDYSSPLQWRNRGKVVVAEAETISVWDVNSVNPQSLLSVSLAG RKISALHVINTDAELGGGVRQRATSAEAEGNDGVFCTHDSINVLDFRNPSGIGLKIPKIGASVQSVFSRGDSIYIGCANTRFAGKKHPCSQVQHFSMRKQ RLVNTYSLPESNAQPHYSAITQVWGNSNVVMGVCGLGLFAFDALKDDAPQSLTGDIGSTQKVKDVIGPDDLDSPSFDYLASCALLVSRDRPALWKRLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14310			Transducin/WD40 repeat-like su...		Potri.008G169200 [exp]	0	1
AT4G21820			binding;calmodulin binding (.1...		Potri.004G017500 [exp]	3.46	0.9364
AT5G05240			Uncharacterised conserved prot...		Potri.019G058200 [exp]	8.30	0.9272
AT3G51290			Protein of unknown function (D...		Potri.005G112300 [exp]	9.59	0.8878
AT2G26180		IQD6	IQ-domain 6 (.1)		Potri.006G226600 [exp]	10.48	0.9093
AT4G17240			unknown protein		Potri.006G017200 [exp]	12.44	0.9238
AT2G33560		BUBR1	BUB1-related (BUB1: budding un...		Potri.005G258300 [exp]	12.48	0.9329
AT3G57060			binding (.1.2)		Potri.006G041500 [exp]	12.72	0.9168
AT1G11125			unknown protein		Potri.011G045700 [exp]	15.09	0.8757
AT4G33400			Vacuolar import/degradation, V...		Potri.002G126500 [exp]	15.90	0.9091
AT5G06590			unknown protein		Potri.016G064200 [exp]	18.54	0.9108

Compare expression of checked genes

Potri.008G169200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.