Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23410 854 / 0 ATFAO3 ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, fatty alcohol oxidase 3 (.1) AT4G28570 790 / 0 Long-chain fatty alcohol dehydrogenase family protein (.1) AT1G03990 712 / 0 Long-chain fatty alcohol dehydrogenase family protein (.1) AT4G19380 500 / 8e-168 Long-chain fatty alcohol dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G069100 [exp] 1214 / 0 AT3G23410 851 / 0.0 ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, fatty alcohol oxidase 3 (.1) Potri.004G234900 [exp] 516 / 1e-172 AT4G19380 864 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Potri.002G259700 [exp] 318 / 1e-99 AT1G03990 300 / 5e-93 Long-chain fatty alcohol dehydrogenase family protein (.1) Potri.006G210150 [exp] 48 / 3e-05 AT4G28570 51 / 4e-06 Long-chain fatty alcohol dehydrogenase family protein (.1) Potri.006G210325 [exp] 48 / 3e-05 AT1G03990 67 / 4e-11 Long-chain fatty alcohol dehydrogenase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022903 [exp] 811 / 0 AT4G28570 837 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10024922 [exp] 780 / 0 AT4G28570 833 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10008239 [exp] 761 / 0 AT4G28570 852 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10003621 [exp] 759 / 0 AT4G28570 853 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10011800 [exp] 551 / 0 AT3G23410 527 / 0.0 ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, fatty alcohol oxidase 3 (.1) Lus10035673 [exp] 529 / 1e-178 AT4G19380 793 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10037257 [exp] 504 / 2e-169 AT4G19380 765 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10011801 [exp] 279 / 2e-87 AT4G28570 243 / 3e-74 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10021165 [exp] 148 / 4e-40 AT4G28570 148 / 8e-41 Long-chain fatty alcohol dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00732 [poplar] [flax] GMC_oxred_N GMC oxidoreductase CL0063 [poplar] [flax] PF05199 [poplar] [flax] GMC_oxred_C GMC oxidoreductase
Representative CDS sequence Show only first row Show all	>Potri.008G169300.1 pacid=42806908 polypeptide=Potri.008G169300.1.p locus=Potri.008G169300 ID=Potri.008G169300.1.v4.1 annot-version=v4.1 ATGAGAAGACAGTGCCATCCTTTGTTGAGTGGAGGGAGAACAAGAGAGAGCAAGTACAGTCATGGGCTCTCTTCTGCTGAGATGGATTCGCTTGCTAGTC TATGTGAAACCATATTGCCTTCTCTGCCGCCACCAGTTACTACTTTGGACGGAAAACAACACCAGCCTACCAAGGCCGTGCAGGCCCTATACAGAGCTTC TGGCTCTCAAACGCCTATGCCTGATGAGATTGCAGAGCTTTTAAGGAAGAGGGGTTTGCCAGAAGCTGTGTTCCTGGTGAGATTGGTTCTATGGCTTCTA TCTACTAGGCTGGGTACATTTTTGCTTTGCGGGTCTCTTTGTTTTGGGGAGAAATGGCTCTGCATTAAGAATTTTTCAAGCATCTCTTTGGATAAGAGGG AGAAGGTTCTGCAGAAATGGTTCAAACGCAGGTTTTTTACAGCTATCAGAATTGCCTTCATTTATGTCAAGGTCTTGTGCGTCTTCGTTTTCTTCTCTCG GGTTGGTCAAAATGGTGACAACCCAGCATGGGAAGCCATTGAATATTGTGCAGGCACTGATGAAAATCCAGACCAGGTTCCGAAAGAGAGGCCCCTTCAA AAGGGATTGATAGATACGAATCAAGAAACTGACTCCACCCTTCTCCGCTCTCTTACAGAAAAAGGCCTAGAAGTTACGCGAGATCCTCGAAGGAACCTTT GTAAAATCAAATGTGATGTTGTTATTGTTGGCTCCGGTTGTGGTGGAGGAGTTGCCGCGGCTGTTCTTGCAGCTTCTGGGCAAAAGGTCTTTGTTCTCGA GAAAGGGAACTACTTTACTGCTACGGATTATTCTGGTTTGGAAGGCCCTTCCTTGGCTCAACTATACGAATCAGGTGGATTGCTTACAAGTGCTGATGCA GGGGTGATAATTATGGCAGGATCAGCAGTTGGAGGAGGTTCTGTTGTTAATTGGTCAGCATCCATCAAAACACCAAACTCTGTGCTTCAGGAATGGACCA AGAACCAGAAAATTCCACTTTTTGGTAGCTCTGAATATCTTTCTGCCATGGATACTGTTTGTGCGAGAATAGGAGTTACAGAGAATTGTAAAGTGGAAGG ATTTCAAAATCAAGTACTTCGAAAAGGGTGCGAGCGCCTTGGTGTTCCCGTCAAAACCGTCCCACGAAATTCCTCAGAGAGACATTATTGTGGCTCTTGT GGTTATGGTTGTCGAAAAGGAGAGAAGAAAGGGACTGATCGTACATGGCTGGTTGATGCTGTTGATAACGGGGCAGTGATCTTAACAGGATGCAAAGCAG AGAGATTCATATTGGAAAAGAACAAGGGCTTAGGTAAACGAAAAAAGAAGTGCTTGGGAGTGATTGCAAAAATTATAAACAACAACATCATAACAAGATT GCAAATCGAGGCCAAGGTAACAATCTCAGCATGTGGAGCTCTCTTGACACCGCCTTTAATGATCTCTAGTGGATTGAAGAATCAGAATATAGGTAGGAAC CTTCATCTGCACCCTGTCCTAATGGCCTGGGGATACTTTCCCGAGTCAAATTCAGAGTTCAAGGGGAAAGTATATGATGGTGGAATAATCACAGCAGTTC ATGAAGTGGTAGCAGGAGACTCCAATGTAAGGGCAATTGTAGAAACCCCTGGATTAGGGCCTTCTTCATTTTCTGTATTATGTCCCTGGGTGTCTGGGCA TGACATGAAGAACAGAATGATGAAGTATTCAAGAACTGCTCACCTCATAACAATAATAAGAGACAGCGGGTCTGGAAAAGTTACGACAGAGGGAAGGATA TCCTATTACTTAAATGCATCGGACAGAGACAATCTCAAGGTAGGGCTGCGGCAGGCATTGAGGATTTTAGTAGCAGCGGGAGCAGTCGAAGTGGGTACAC ATAGAAGCGATGGGCAGAGGATCAAATGTAGAGGGATAAAAATAGAGGATCTGGAGGAATTTTTGGACACAGTTTATGCTACCGGGGGGGCTCTGTCACT GGAAGAGGACTGGATGTTTTACTCCTCAGCCCATCAAATGGGGAGCTGCAGGATGGGGATTAATGAAAAAGAAGGTGCTGTTGATGAGAATGGAGAAAGT TGGGAAGCAGAAGGCCTGTTCGTTTGTGACGCTAGTGTTTTGCCAAGTGCCGTGGGTGTTAATCCAATGATCACAATCCAGTCCACTGCTTACTGTCTCT CGAAGAAAATAGCAGAGTCCTTACGCAAAGATTAA
AA sequence Show only first row Show all	>Potri.008G169300.1 pacid=42806908 polypeptide=Potri.008G169300.1.p locus=Potri.008G169300 ID=Potri.008G169300.1.v4.1 annot-version=v4.1 MRRQCHPLLSGGRTRESKYSHGLSSAEMDSLASLCETILPSLPPPVTTLDGKQHQPTKAVQALYRASGSQTPMPDEIAELLRKRGLPEAVFLVRLVLWLL STRLGTFLLCGSLCFGEKWLCIKNFSSISLDKREKVLQKWFKRRFFTAIRIAFIYVKVLCVFVFFSRVGQNGDNPAWEAIEYCAGTDENPDQVPKERPLQ KGLIDTNQETDSTLLRSLTEKGLEVTRDPRRNLCKIKCDVVIVGSGCGGGVAAAVLAASGQKVFVLEKGNYFTATDYSGLEGPSLAQLYESGGLLTSADA GVIIMAGSAVGGGSVVNWSASIKTPNSVLQEWTKNQKIPLFGSSEYLSAMDTVCARIGVTENCKVEGFQNQVLRKGCERLGVPVKTVPRNSSERHYCGSC GYGCRKGEKKGTDRTWLVDAVDNGAVILTGCKAERFILEKNKGLGKRKKKCLGVIAKIINNNIITRLQIEAKVTISACGALLTPPLMISSGLKNQNIGRN LHLHPVLMAWGYFPESNSEFKGKVYDGGIITAVHEVVAGDSNVRAIVETPGLGPSSFSVLCPWVSGHDMKNRMMKYSRTAHLITIIRDSGSGKVTTEGRI SYYLNASDRDNLKVGLRQALRILVAAGAVEVGTHRSDGQRIKCRGIKIEDLEEFLDTVYATGGALSLEEDWMFYSSAHQMGSCRMGINEKEGAVDENGES WEAEGLFVCDASVLPSAVGVNPMITIQSTAYCLSKKIAESLRKD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23410		ATFAO3	ARABIDOPSIS FATTY ALCOHOL OXID...		Potri.008G169300 [exp]	0	1
AT4G40050			Protein of unknown function (D...		Potri.007G096800 [exp]	1.73	0.8131
AT2G46225		ABIL1, ABI1L1	ABI-1-like 1 (.1.2.3)		Potri.002G165900 [exp]	5.91	0.7576
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.003G008200 [exp]	6.48	0.8039
AT2G24130			Leucine-rich receptor-like pro...		Potri.003G184100 [exp]	6.48	0.7782
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Potri.014G015500 [exp]	10.95	0.7644
AT2G27920		SCPL51	serine carboxypeptidase-like 5...		Potri.006G119300 [exp]	11.40	0.7401
AT4G11820		FKP1, EMB2778, ...	FLAKY POLLEN 1, hydroxymethylg...		Potri.001G111700 [exp]	16.24	0.7536
AT5G61280			Remorin family protein (.1)		Potri.015G049700 [exp]	16.52	0.7271
AT3G19540			Protein of unknown function (D...		Potri.009G092400 [exp]	21.84	0.7420
AT3G23000		PKS7, ATSRPK1, ...	SNF1-RELATED PROTEIN KINASE 3....		Potri.010G079000 [exp]	24.08	0.7145	CIPK4.2

Compare expression of checked genes

Potri.008G169300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.