Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PHO1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23430 1020 / 0 PHO1, ATPHO1 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) AT1G68740 606 / 0 PHO1;H1 EXS (ERD1/XPR1/SYG1) family protein (.1) AT3G29060 441 / 2e-143 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G26730 411 / 1e-132 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G69480 408 / 4e-131 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G14040 409 / 5e-131 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G35350 402 / 6e-129 EXS (ERD1/XPR1/SYG1) family protein (.1) AT4G25350 397 / 2e-127 SHB1 SHORT HYPOCOTYL UNDER BLUE1, EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03240 397 / 2e-126 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03260 393 / 4e-125 EXS (ERD1/XPR1/SYG1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G069000 [exp] 1298 / 0 AT3G23430 1069 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Potri.010G132300 [exp] 733 / 0 AT1G68740 1139 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.008G110800 [exp] 732 / 0 AT1G68740 1096 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.008G090400 [exp] 417 / 2e-134 AT1G14040 1037 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.017G086800 [exp] 415 / 2e-133 AT3G29060 853 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165800 [exp] 414 / 5e-133 AT1G14040 1032 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165300 [exp] 412 / 3e-132 AT1G14040 1022 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G164900 [exp] 408 / 7e-131 AT1G14040 992 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.016G032900 [exp] 380 / 1e-120 AT1G14040 865 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021164 [exp] 1118 / 0 AT3G23430 1066 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Lus10011799 [exp] 1105 / 0 AT3G23430 1080 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Lus10019155 [exp] 679 / 0 AT1G68740 1065 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10034400 [exp] 673 / 0 AT1G68740 1057 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030439 [exp] 399 / 3e-127 AT1G14040 1127 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10037147 [exp] 382 / 7e-121 AT1G14040 1071 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10036779 [exp] 377 / 6e-119 AT1G14040 1080 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030440 [exp] 375 / 3e-118 AT1G14040 1048 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030438 [exp] 370 / 2e-116 AT1G14040 976 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10026623 [exp] 369 / 4e-116 AT1G14040 1058 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03105 [poplar] [flax] SPX SPX domain CL0182 [poplar] [flax] IT PF03124 [poplar] [flax] EXS EXS family
Representative CDS sequence Show only first row Show all	>Potri.008G169400.1 pacid=42807943 polypeptide=Potri.008G169400.1.p locus=Potri.008G169400 ID=Potri.008G169400.1.v4.1 annot-version=v4.1 ATGGTGAAGTTCTCAAAGGAGCTTGAAGCTCAACTAATCCCAGAATGGAAGGAAGCCTTTGTAAACTACTGGCAACTCAAGAAGCAGATAAAGAAGATCA AACTCTCACAAAAATCCAAACAACCCCAACAAGTTCTTGACCATGAATTTGGTCTTTCCATTTTTGATCCCATTCGCTCCCTCGCCAAAAATATATCCAG CAAGCTCTTCCACTCCGATACCGAAACCGAAATCATTCAGGCGAGGAGCAAGAGCATGGAGGATGGTGATGAAGAAGTACTGTACCAAACCGAGCTTGTT CAATTGTTCTCCGAAGAAGATGAGGTGGCGGTGTTTTTTGAGAGTCTGGATGGAGAGTTAAATAAAGTGAACCAGTTTTACAAGAATAAAGAGAGCGAAT TTCTTGAAAGAGGAGAGATACTTAACAAGCAGCTAGAGACTTTGCAGGACCTCAAACGGGTTCTCAACGAGCACTGTCGTCGTAAGCCGAATGCCGGAGT CCTTCCTCTTTCTTGCTCATCCTCACCACCTCGAAACTCCTTTTGTTCTGAAAGCGCGAGTGAATCAAATGAGACCTCTGCAGATTCACAGATTGATGAA ATCATCGCAGCACTGGAGAGAGATGGCATCAATTCGGCCACAAGAAAAAAAACAAAGAAAGGGAAACCTAAGATGGCAATGAGGATTGGCATTCCAGCTG CTGCACCAACACGAACGATCACGGCTGTAACATCAATGTTGTGGGAAGATTTGGTTAATAACCCTAAAAAGGAATTAGGTGCTGGAGATTTCATTAATAG AAAGAAAATCCAGTGTGCTGAGAAGATGATTAGAGGTGCATTTGTGGAGCTCTATAGAGGCCTCGGTCTCCTTAAAACTTACAGCTCGTTGAATATGGTG GCCTTCACGAAAATATTGAAGAAATTCGACAAGGTCTCTAATCAACAAGCATCAGCAAGTTATTTAAAAGTAGTGAAGAGATCCCACTTCATTAGCTCTG ATAAGGTTGTGAGACTAATGGATGATGTGGAGTCCATCTTCACAAAGCACTTCGCCAACAATGACAGGAAAAAGGCGATGAAGTTCCTGAAACCCCAGCA ACAAAAAGAGTCTCACATGGTTACGTTTTTTGTTGGATTGCTTACTGGTTGTTTTGTATCACTGTTCAGTTTATACGCAATCTTGGCACACTTGGCTGGT ATTTTTAAGCCAAATTCTGAAAGATCATACGTGGAAACTGTCTACCCTGTTTTCAGTGTCTTCACCTTGTTAAGTTTTCACTTGTTTATGTACGGGTGCA ATCTCTTCATGTGGAAGGGTACACGGATCAACTACAATTTCATTTTTGAATTCCAACCCAGCACAGCCCTCAAGTACAGAGATGCCTTTCTCATTTGCAC CACTTTCATGACCTCGGTGGTTGCAGCAATGGTAATCCATCTTCTCTTAAGGGCTAGCGGTTTTTCACCAAACCATGTCGATGCCATTCCTGGGATTCTC CTCCTAATTTTTATTTTCGTGCTCATTTGCCCTTTTGACATCTTCTATCGTCCAACACGTTATTGCTTCATCCGGATTATACGAAACATAGTCTGCTCTC CATTTTACAAGGTTTTGATGGTCGACTTTTTCATGGCAGACCAACTTACTAGCCAGATTCCATTGTTGAGGCACATGGGATCCGCAACTTGCTACTTTCT AGCTGGGAGTTTCAAGACACATAGATATGAAACCTGCAAATCCGGAAGGCTATATAGGGAGCTTGCTTATGTCATTTCATTTTTGCCTTACTATTGGCGT GCTATGCAGTGTGCAAGAAGATGGTTTGATGAAAGTGACCTCAACCATTTGGCTAACATGGGGAAGTACGTTTCTGCCATGGTGGCAGCTGGTGCGAGGA TAACTTACGGTAGGCAGGAGAACCACCTATGGTTTGGTATAGTCCTGGTTACTTCTGTGTTTTCCACAGTCTATCAATTGTATTGGGATTTTGTTAAGGA CTGGGGCCTTCTCAACTCTAAATCCAAGAATCTATGGCTAAGAGATAATTTGATACTGAACAACAAAAGCATGTACTACATGTCCATCGTCTTGAACATA GTTCTTAGAGTTGCTTGGGTGGAGACGGTCATGGGGTTCCGCTTCAACATGGTTGAGTCACGTATGTTAGATTTTTTATTGGCTTCTTTGGAGGTAATTC GACGTGGCCACTGGAATTTTTACAGGTTGGAGAATGAGCATCTGAATAATGTTGGCAAGTTCAGGGCGGTGAAAGCAGTTCCCTTGCCATTCCGCGAGAC TGATTCTGATGGCTGA
AA sequence Show only first row Show all	>Potri.008G169400.1 pacid=42807943 polypeptide=Potri.008G169400.1.p locus=Potri.008G169400 ID=Potri.008G169400.1.v4.1 annot-version=v4.1 MVKFSKELEAQLIPEWKEAFVNYWQLKKQIKKIKLSQKSKQPQQVLDHEFGLSIFDPIRSLAKNISSKLFHSDTETEIIQARSKSMEDGDEEVLYQTELV QLFSEEDEVAVFFESLDGELNKVNQFYKNKESEFLERGEILNKQLETLQDLKRVLNEHCRRKPNAGVLPLSCSSSPPRNSFCSESASESNETSADSQIDE IIAALERDGINSATRKKTKKGKPKMAMRIGIPAAAPTRTITAVTSMLWEDLVNNPKKELGAGDFINRKKIQCAEKMIRGAFVELYRGLGLLKTYSSLNMV AFTKILKKFDKVSNQQASASYLKVVKRSHFISSDKVVRLMDDVESIFTKHFANNDRKKAMKFLKPQQQKESHMVTFFVGLLTGCFVSLFSLYAILAHLAG IFKPNSERSYVETVYPVFSVFTLLSFHLFMYGCNLFMWKGTRINYNFIFEFQPSTALKYRDAFLICTTFMTSVVAAMVIHLLLRASGFSPNHVDAIPGIL LLIFIFVLICPFDIFYRPTRYCFIRIIRNIVCSPFYKVLMVDFFMADQLTSQIPLLRHMGSATCYFLAGSFKTHRYETCKSGRLYRELAYVISFLPYYWR AMQCARRWFDESDLNHLANMGKYVSAMVAAGARITYGRQENHLWFGIVLVTSVFSTVYQLYWDFVKDWGLLNSKSKNLWLRDNLILNNKSMYYMSIVLNI VLRVAWVETVMGFRFNMVESRMLDFLLASLEVIRRGHWNFYRLENEHLNNVGKFRAVKAVPLPFRETDSDG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23430		PHO1, ATPHO1	ARABIDOPSIS PHOSPHATE 1, phosp...		Potri.008G169400 [exp]	0	1	PHO1.1
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Potri.006G165900 [exp]	4.12	0.9184
AT3G62270			HCO3- transporter family (.1)		Potri.015G077600 [exp]	12.00	0.8794
AT5G17680			disease resistance protein (TI...		Potri.019G070700 [exp]	15.96	0.8638
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.007G117050 [exp]	30.33	0.9033
AT1G65810			P-loop containing nucleoside t...		Potri.008G142960 [exp]	33.80	0.8893
AT3G46620			zinc finger (C3HC4-type RING f...		Potri.006G164516 [exp]	35.72	0.8472
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Potri.014G072100 [exp]	36.82	0.9023
AT4G19380			Long-chain fatty alcohol dehyd...		Potri.004G234900 [exp]	40.73	0.8547
AT2G21210			SAUR-like auxin-responsive pro...		Potri.009G127500 [exp]	55.20	0.8752
AT2G44930			Plant protein of unknown funct...		Potri.014G054100 [exp]	64.48	0.8410

Compare expression of checked genes

Potri.008G169400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.