Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32580 284 / 2e-97 plastid developmental protein DAG, putative (.1) AT2G35240 275 / 5e-94 plastid developmental protein DAG, putative (.1) AT2G33430 267 / 6e-91 DAL1, DAL differentiation and greening-like 1 (.1) AT3G06790 137 / 7e-40 plastid developmental protein DAG, putative (.1.2) AT1G11430 137 / 8e-40 plastid developmental protein DAG, putative (.1) AT3G15000 127 / 3e-34 cobalt ion binding (.1) AT1G72530 105 / 5e-28 plastid developmental protein DAG, putative (.1.2) AT4G20020 98 / 2e-23 unknown protein AT3G20930 86 / 2e-19 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G44780 82 / 7e-18 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G068300 [exp] 389 / 1e-138 AT1G32580 314 / 2e-109 plastid developmental protein DAG, putative (.1) Potri.010G007200 [exp] 143 / 8e-42 AT3G06790 269 / 6e-91 plastid developmental protein DAG, putative (.1.2) Potri.011G032900 [exp] 142 / 1e-41 AT1G11430 261 / 1e-88 plastid developmental protein DAG, putative (.1) Potri.011G112200 [exp] 134 / 5e-37 AT3G15000 245 / 2e-77 cobalt ion binding (.1) Potri.001G393400 [exp] 131 / 5e-36 AT3G15000 263 / 2e-84 cobalt ion binding (.1) Potri.010G237200 [exp] 104 / 5e-26 AT3G20930 429 / 5e-150 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.008G022200 [exp] 102 / 3e-25 AT3G20930 427 / 3e-149 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.003G015100 [exp] 99 / 1e-23 AT4G20020 239 / 2e-74 unknown protein Potri.004G218650 [exp] 63 / 3e-11 AT4G20020 187 / 5e-53 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011789 [exp] 311 / 6e-108 AT1G32580 341 / 5e-120 plastid developmental protein DAG, putative (.1) Lus10023744 [exp] 306 / 9e-106 AT1G32580 342 / 2e-120 plastid developmental protein DAG, putative (.1) Lus10016825 [exp] 147 / 4e-43 AT3G06790 286 / 1e-97 plastid developmental protein DAG, putative (.1.2) Lus10007615 [exp] 140 / 1e-40 AT1G11430 314 / 2e-109 plastid developmental protein DAG, putative (.1) Lus10018398 [exp] 138 / 1e-40 AT1G11430 309 / 2e-108 plastid developmental protein DAG, putative (.1) Lus10014696 [exp] 140 / 2e-39 AT3G15000 291 / 1e-95 cobalt ion binding (.1) Lus10043130 [exp] 137 / 1e-37 AT3G15000 284 / 6e-92 cobalt ion binding (.1) Lus10032618 [exp] 134 / 6e-37 AT3G15000 301 / 2e-99 cobalt ion binding (.1) Lus10032619 [exp] 129 / 1e-36 AT3G15000 223 / 3e-71 cobalt ion binding (.1) Lus10036589 [exp] 97 / 3e-23 AT4G20020 271 / 1e-87 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G169900.2 pacid=42808368 polypeptide=Potri.008G169900.2.p locus=Potri.008G169900 ID=Potri.008G169900.2.v4.1 annot-version=v4.1 ATGACCCCAACCCTAGCTCGCTCCCTCACCACCCGCCATCTTAATCTCTGCGTCCTCCTCCCCAAACGCCTCCTCTCCACCATCTCAATAACCCATCTTC CCTCACCTCCCACTCTTCTCTGCGGCCAATCTTTACCCTCACTCTCTCACAATCTCCAATCTATCAACAAAACCACTAACCCCGCCGCCCGTTTCACTTC CATTCGATGCCGGGTTAACCGAGCCGGCAACTCGGGCTACTCGCCCTTGAACTCGGGGTCAAACTTCAGTGACCGGCCACCCAATGAGATGGCCCCACTT TTCCCTGGTTGTGATTATGAGCACTGGCTTATTGTTATGGATAAGCCTGGCGGTGAGGGTGCCACTAAGCAGCAAATGATTGATTGTTATATTGAAACTT TAGCCAAAGTTGTTGGCAGTGAGGAGGAAGCAAAGACGAAGATTTATAATGTTTCCTGTGAGAGGTATTTTGGATTTGGATGCGAGATTGATGAGGAAAC CTCTAACAAGCTTGAAGGTTTGCCTGGTGTTCTCTTTGTCCTCCCGGATTCATATGTTGACCCCGAATACAAAGACTATGGTGCTGAGTTGTTCGTGAAT GGTGAGATAGTTCAGAGGCCACCTGAAAGACAGAGAAGGGTGGAACCTCAGCCGCAGAGAGCTAATGACAGACCAAGATATAATGACAGAACCCGATATG TGCGACGCAGAGAAAATATGCGGTGA
AA sequence Show only first row Show all	>Potri.008G169900.2 pacid=42808368 polypeptide=Potri.008G169900.2.p locus=Potri.008G169900 ID=Potri.008G169900.2.v4.1 annot-version=v4.1 MTPTLARSLTTRHLNLCVLLPKRLLSTISITHLPSPPTLLCGQSLPSLSHNLQSINKTTNPAARFTSIRCRVNRAGNSGYSPLNSGSNFSDRPPNEMAPL FPGCDYEHWLIVMDKPGGEGATKQQMIDCYIETLAKVVGSEEEAKTKIYNVSCERYFGFGCEIDEETSNKLEGLPGVLFVLPDSYVDPEYKDYGAELFVN GEIVQRPPERQRRVEPQPQRANDRPRYNDRTRYVRRRENMR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G32580			plastid developmental protein ...		Potri.008G169900 [exp]	0	1
AT1G59990		RH22, EMB3108	RNA helicase 22, EMBRYO DEFECT...		Potri.008G193800 [exp]	1.00	0.9703
AT1G08640		CJD1	Chloroplast J-like domain 1 (....		Potri.013G046200 [exp]	1.73	0.9667
AT1G10522			unknown protein		Potri.010G094900 [exp]	2.44	0.9673
AT1G09830			Glycinamide ribonucleotide (GA...		Potri.004G225500 [exp]	3.16	0.9632
AT3G47450		RIF1, ATNOA1, A...	RESISTANT TO INHIBITION WITH F...		Potri.001G124900 [exp]	4.89	0.9644
AT2G37400			Tetratricopeptide repeat (TPR)...		Potri.016G080000 [exp]	6.00	0.9553
AT5G59500			protein C-terminal S-isoprenyl...		Potri.009G033700 [exp]	7.74	0.9535
AT4G27990		ATYLMG1-2	YGGT family protein (.1)		Potri.002G250200 [exp]	12.96	0.9610
AT3G53900		UPP, PYRR	PYRIMIDINE R, uracil phosphori...		Potri.006G091000 [exp]	13.85	0.9406
AT4G37510			Ribonuclease III family protei...		Potri.007G053000 [exp]	14.69	0.9613

Compare expression of checked genes

Potri.008G169900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.