Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46050 816 / 0 ATPTR3, PTR3 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) AT5G46040 766 / 0 Major facilitator superfamily protein (.1) AT2G40460 577 / 0 Major facilitator superfamily protein (.1) AT2G02040 525 / 0 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT3G54140 514 / 1e-177 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT1G62200 499 / 2e-171 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT5G01180 493 / 2e-169 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT2G02020 447 / 2e-151 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2) AT3G53960 429 / 1e-143 Major facilitator superfamily protein (.1) AT3G54450 419 / 2e-140 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G068100 [exp] 1052 / 0 AT5G46050 829 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.002G258900 [exp] 804 / 0 AT5G46050 730 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.002G258700 [exp] 786 / 0 AT5G46050 695 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.019G055800 [exp] 590 / 0 AT2G40460 874 / 0.0 Major facilitator superfamily protein (.1) Potri.010G100200 [exp] 519 / 3e-179 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.011G120000 [exp] 511 / 4e-176 AT2G02040 809 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.009G042400 [exp] 492 / 1e-168 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.001G248600 [exp] 489 / 7e-168 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111800 [exp] 484 / 1e-165 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011786 [exp] 968 / 0 AT5G46050 831 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10023743 [exp] 962 / 0 AT5G46050 827 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10008232 [exp] 764 / 0 AT5G46050 729 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10003614 [exp] 763 / 0 AT5G46050 726 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10022892 [exp] 730 / 0 AT5G46050 688 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10022891 [exp] 726 / 0 AT5G46050 714 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10024935 [exp] 673 / 0 AT5G46050 654 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10034206 [exp] 532 / 0 AT2G40460 783 / 0.0 Major facilitator superfamily protein (.1) Lus10030947 [exp] 523 / 1e-180 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10040099 [exp] 520 / 1e-179 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00854 [poplar] [flax] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Potri.008G170100.1 pacid=42807577 polypeptide=Potri.008G170100.1.p locus=Potri.008G170100 ID=Potri.008G170100.1.v4.1 annot-version=v4.1 ATGGAAAACGGGCTTGATGAGTGCACACAAGATGGGACTGTGGATCTCAAAGGAAATCCTGTTCTTAGATCCAAGAGAGGCGGATGGAGAGCTTGCTCCT TTGTTGTTGTGTATGAGGTTTTCGAACGTATGGCATACTATGGGATATCAAGCAATCTTGTAGTGTACTTGACCAAGAAGCTCCATGAAGGCACAGTGAG GTCGTCCAATAATGTTACGAATTGGGTTGGCACCATTTGGATGACTCCTATCTTGGGTGCTTATGTTGCCGACGCTCACCTTGGTCGGTACTGGACCTTC CTCACCGCATCTGTTATCTATCTTTTGGGGATGTCTCTACTAACACTATCAGTTTCCCTTCCTGCTCTAAGACCACCTCCCTGCAAGGATGCCAATTCGG ACAACTGTAGAAAGGCCTCCACAATGCAATTAGCAGTGTTCTTTGGCGCCCTCTACACGCTAGCTGTTGGAACTGGCGGCACAAAGCCGAACATCTCGAC CATCGGTGCTGACCAATTTGATGATTTCCATCCTAAGGAGAAGGCTCATAAGCTATCCTTCTTCAATTGGTGGATGTTCAGCATCTTCTTTGGAACACTC TTTGCTAACACTGTACTTGTGTACATACAAGACAATGTAGGTTGGGCATTAGGGTATGGGCTTCCAACACTTGGGCTTTTGATATCGGTGGCTATATTCT TAGCTGGCACACCATATTATAGGCACAGGCTGCCAACAGGAAGCCCATTTACAAGGATGGCTAAGGTCATAGTGGCAGCCCTGCGGAAATCGAAGGTTTC AGTCCCTAGCGACCCTAAGGAACTCTATGAGCTCGACTTGGAAGAATATGCTAAGGGGGGGAAGTTCAGGATTGATTCCACACCAACCTTGAGGTTCCTC ACTAAAGCTGCTGTGAAAACAGGTCGAACTGACCCATGGATGCTTTGCTCAGTTACTCAAGTAGAGGAGACTAAACAGATGTTGAGAATGATTCCGATAC TGATTGCCACATTCGTCCCAAGCACGATGATTGCTCAGATAAATACTCTTTTTGTCAAGCAAGGCACTACTCTTGATAGAAACATTGGCAGCTTCAAAAT CCCACCAGCAAGCTTAGTTGGATTTGTGACACTATCAATGCTTGTTTGTGTTGTGCTATATGACAGGTTCTTTGTTAGTATTGCTCGTAGATGGACAAAG AATCCCAGGGGGATCACTCTTCTTCAGAGAATGGGAATAGGCCTTGTTTTTCACATTATAATCATGATAGCTGCATCACTGATTGAAAGGCACAGATTAA GTGTGGCCAGAGAACATGGCTTGGTTGAGAATGGAGGTCAAATCCCTTTGACGATATTCATTTTGCTTCCTCAATTTGTGCTCATGGGAGTGGCTGATGC ATTTTTAGAGGTGGCCAAGCTCGAGTTCTTCTATGACCAGGCACCTGAAAGCATGAAAAGTCTTGGCACTTCTTATTCAACAACCAGTCTTGGAATTGGA AACTTCCTTAGTAGTTTCCTTCTTTCCACAGTTTCTGATATCACCAAGAAGCATGGTCACCGAGGGTGGATTTTGAATAACCTAAATGCTTCTCACCTGG ACTATTATTATGCCTTCTTCGCGATACTCAACTTCTTGAACTTCATTTTCTTCTTGATTGTGAATAGGTTGTATGTGTATAAGGCTGAAGTTTCAGATTC AATGGAAGTACTGGCTGAAGAATTGAAAGGGATGACATTGACGGAACCTAACCAAGTTTCTTCACATGAATGA
AA sequence Show only first row Show all	>Potri.008G170100.1 pacid=42807577 polypeptide=Potri.008G170100.1.p locus=Potri.008G170100 ID=Potri.008G170100.1.v4.1 annot-version=v4.1 MENGLDECTQDGTVDLKGNPVLRSKRGGWRACSFVVVYEVFERMAYYGISSNLVVYLTKKLHEGTVRSSNNVTNWVGTIWMTPILGAYVADAHLGRYWTF LTASVIYLLGMSLLTLSVSLPALRPPPCKDANSDNCRKASTMQLAVFFGALYTLAVGTGGTKPNISTIGADQFDDFHPKEKAHKLSFFNWWMFSIFFGTL FANTVLVYIQDNVGWALGYGLPTLGLLISVAIFLAGTPYYRHRLPTGSPFTRMAKVIVAALRKSKVSVPSDPKELYELDLEEYAKGGKFRIDSTPTLRFL TKAAVKTGRTDPWMLCSVTQVEETKQMLRMIPILIATFVPSTMIAQINTLFVKQGTTLDRNIGSFKIPPASLVGFVTLSMLVCVVLYDRFFVSIARRWTK NPRGITLLQRMGIGLVFHIIIMIAASLIERHRLSVAREHGLVENGGQIPLTIFILLPQFVLMGVADAFLEVAKLEFFYDQAPESMKSLGTSYSTTSLGIG NFLSSFLLSTVSDITKKHGHRGWILNNLNASHLDYYYAFFAILNFLNFIFFLIVNRLYVYKAEVSDSMEVLAEELKGMTLTEPNQVSSHE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.008G170100 [exp]	0	1
AT2G01170		BAT1	bidirectional amino acid trans...		Potri.010G119100 [exp]	1.00	0.9387
AT1G11330			S-locus lectin protein kinase ...		Potri.004G027300 [exp]	1.41	0.9363
AT4G01720	WRKY	ATWRKY47, WRKY4...	WRKY family transcription fact...		Potri.002G186600 [exp]	2.64	0.9040	Pt-WRKY47.2
AT5G38260			Protein kinase superfamily pro...		Potri.017G117340 [exp]	3.46	0.9139
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.005G013100 [exp]	4.58	0.9301
AT1G69850		NTL1, ATNRT1:2	nitrate transporter 1:2 (.1)		Potri.010G034300 [exp]	6.00	0.8905	NTL1.1
AT2G16750			Protein kinase protein with ad...		Potri.009G134700 [exp]	6.32	0.8717
AT2G23770			protein kinase family protein ...		Potri.010G078700 [exp]	6.32	0.9039
AT4G35160			O-methyltransferase family pro...		Potri.004G050400 [exp]	8.66	0.9076	FOMT2,Pt-OOMT2.13
AT3G53820	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.016G101300 [exp]	8.77	0.8982

Compare expression of checked genes

Potri.008G170100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.