Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33420 1382 / 0 Protein of unknown function (DUF810) (.1) AT1G04470 1326 / 0 Protein of unknown function (DUF810) (.1) AT2G25800 651 / 0 Protein of unknown function (DUF810) (.1) AT2G20010 613 / 0 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) AT5G06970 347 / 2e-102 Protein of unknown function (DUF810) (.1) AT4G11670 166 / 1e-41 Protein of unknown function (DUF810) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G068000 [exp] 1768 / 0 AT2G33420 1437 / 0.0 Protein of unknown function (DUF810) (.1) Potri.006G238200 [exp] 687 / 0 AT2G25800 1446 / 0.0 Protein of unknown function (DUF810) (.1) Potri.018G044200 [exp] 665 / 0 AT2G25800 1442 / 0.0 Protein of unknown function (DUF810) (.1) Potri.018G085900 [exp] 592 / 0 AT2G20010 1166 / 0.0 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) Potri.001G030100 [exp] 335 / 2e-98 AT5G06970 1437 / 0.0 Protein of unknown function (DUF810) (.1) Potri.001G108400 [exp] 220 / 1e-58 AT4G11670 1097 / 0.0 Protein of unknown function (DUF810) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023742 [exp] 1405 / 0 AT2G33420 1426 / 0.0 Protein of unknown function (DUF810) (.1) Lus10011785 [exp] 1224 / 0 AT2G33420 1256 / 0.0 Protein of unknown function (DUF810) (.1) Lus10034947 [exp] 629 / 0 AT2G20010 1236 / 0.0 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) Lus10008431 [exp] 349 / 7e-109 AT2G25800 860 / 0.0 Protein of unknown function (DUF810) (.1) Lus10012970 [exp] 327 / 4e-101 AT2G20010 568 / 0.0 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) Lus10026160 [exp] 329 / 5e-96 AT5G06970 1507 / 0.0 Protein of unknown function (DUF810) (.1) Lus10008430 [exp] 307 / 2e-94 AT2G25800 587 / 0.0 Protein of unknown function (DUF810) (.1) Lus10013392 [exp] 305 / 1e-93 AT2G25800 589 / 0.0 Protein of unknown function (DUF810) (.1) Lus10013391 [exp] 305 / 1e-92 AT2G25800 756 / 0.0 Protein of unknown function (DUF810) (.1) Lus10008663 [exp] 300 / 2e-85 AT5G06970 1449 / 0.0 Protein of unknown function (DUF810) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05664 [poplar] [flax] UNC_13_homolog Unc-13 homolog
Representative CDS sequence Show only first row Show all	>Potri.008G170200.2 pacid=42806343 polypeptide=Potri.008G170200.2.p locus=Potri.008G170200 ID=Potri.008G170200.2.v4.1 annot-version=v4.1 ATGGAAAAAGATAGCCGCTGTCATTCCTTCTCTGGTACCCTAACCACCATCTCCATTGACCCCGCAGACACTGATCTCTCTTGGCCTTTTGGAGACCTTA AAGGTCTTAATAAGGATGACATCCGTGAGACTGCCTATGAGGTCTTCTTCACCGCCTGCCGCTCCTCCCCTGGCTTCGGAGGAGGCCGCAATGCAATCAA CTTTTATTCCAACCACCATCACCAACATCATGATGGGGATGGAGCAGCAGGAACAGGCTCACCGACTGCACGGATGGGCGGTGGCCCGGTGGTGGTCATG TCTCCAACGAGTCGGATAAAGCGAGCTCTGGGGCTGAAGATGCTGAAGAAGTCCCCTACAAGGAGGATGTCCGCAGTGGGAAGCAGCGGAGCCGGGACGG CACCAGTGTCACCTAGCGGTCCTCTACAACATGGAGGGACAAGTCCTGCCCTGGGGTTTGCCACGGTTCCGGTTACAGGGAGGCCTCGGAGGCCGCTGAC ATCTGCGGAGATAATGAGGGCGCAGATGAGAGTGACGGAGCATAGTGATAATCGGTTGAGGAAGACGCTCATGAGGACTCTTGTTGGCCAAGTACGTATT GCTACTATGGGCAGGCGAGCAGAGACAATAATCCTTCCATTGGAGCTCCTCCGCCACCTAAAACCATCAGAATTTAATGACAGTCAAGAGTACCATCTCT GGCAAAGGCGTCAGCTCAAGATCCTGGAGGCTGGTCTCCTCCTGCACCCTTCAATCCCGCTTGATAAATCAAATTCTTATGCTATGCGTCTCCGTGAAAT TATCCATGCCAGCGAGACCAAACCTATTGACACAGGAAAAAATTCTGACACCATGAGAACCTTATGCAACAGTGTTGTTTCCTTGTCTTGGCGAAGTGCC AACGGTACCCCAACCGATGTATGCCATTGGGCTGATGGATTTCCACTCAACATTCACATATACATTTCTCTTCTTCAATCAATATTTGATTTCAGGGATG AGACATTAGTCCTTGATGAGGTTGACGAGCTTGTTGAGTTAATAAAGAAGACATGGTCTGCACTAGGAATCAATAGACCTATACACAATTTGTGCTTTGC TTGGGTGCTTTTCCAGCAATACGTTCTTACTTCACAAGTAGAGCCGGATCTTCTTTATGCGACCCATGCTATGTTATCGACGGAGGTGGCTAATGATGCA AAGAAGCCAGACCGAGAGGCTATGTATGTGAAGCTTTTGTCTTCTATGTTGGCTTCAATGCAAGGGTGGGCAGAGAGGAGATTGCTTCACTACCATGACT ATTTCCAGAGGGGAGATGTTTTCCTAATTGAGAATCTTTTGCCGTTAGCATTATCAGCATCGAAAATTTTGGGCGAGGATGTTACTATCACAGAAGGGGC TGGGAAAGATAAAGGAGACACACAGATAGTTGATTCATCTGGGGATCGTGTGGATCATTACATTCGAGCTTCTGTAAAGAAGGCATTTGCAAAGATAATA GAAACCGGAAGTTATAAGAGCACAAGTCTGCAAGTGAAAGATGAAGCAAGCGAGGCTCTCCTGCAGTTAGCTAAAGAAGTTAAGGATTTGGCCTTGAGAG AAAGGGAGAGTTTTAGCCCCATTCTGAAGAAATGGAACCCGATTGTAGCTAGCGTTGCTGCTGTAACGCTACATCAGTGCTATGGAGCAGTTTTGAAGCA ATATATTGCAGGGATTTCCACCCTCAATAATGAGACCGTTGCAGTACTGCAGAGTGCTGGAAAACTTGAAAAGTTCTTGGTTCAAATGTTGGTTGAAGAC TCTGCAGACTGTGAAGATGGAGGTAAAACAATCGTACGAGAGATGATTCCATATGAAGTTGACTCGGTCATATTGAAGCTTATGAAACAATGGTTCGTAG AGAGGTTGGACAGAGCGAAAGATTGTCTTAGCCGAGCCAAAGATTCTGAAACATGGAATCCGAAGTCCAAACTCGAGCCATATGCGACATCAGCTGCGGA GTTGATGAAAATAGCCAAGGAAGCTGTGAATGATTTCTTTGAAATTCCTGTTGGAATTACTGATGATCTGATTTATGATCTAGCAGAAGGTTTTGATAAT ATCTTCAAAGATTACACCAACCTGGTAGCAGCTTGTGGATCAAAACAGAGCTATGTCCCTACACTCCCTCCTCTAACCAGGTGCAACCGCGACTCGAAGT TCCTTAAACTGTGGAAGAAAGCTGCTCCATGCTCTATCAACACAGAAGATACGCACCAATTTGGTGTAAGTGATGCTCACCATCCTCGGCCATCAACAAG CCGCGGAACACAAAGACTCTACATACGGCTCAACACTTTGCACTATCTTCTCACTCACCTCCACTCTCTAGAAAAGAACCTTGCTCTTGCCCCAAGAACC ACTCCATCCCGTGGTTATCATCGCAGGCATCGCATCAATTCCTCTTCCTACTTTGAACTAGCCCTTGCTTCCATTCAAACTGCCTGTCAACATGTATCAG AAGTTGCTGCTTATCGTCTGATATTCCTCGACTCGAATTCTGTTTTTTATGATAGTCTCTATGTTGCTGATGTAGAAAATTCAAGGATCAGACATGCATT GAGAATTATCAAACAGAACCTTTCTCTGTTGACAGCAATTCTAATTGACCGGGCCCAACCTTTGGCAATGAGAGAAGTCATGAAGGCCTCTTTTGAGGCC TTTCTCACGGTTTTGCTTGCTGGTGGCTGCAGCCGGGTATTTTATCGATCTGATTATCCCATGATCGAGGAAGACTTTGCCAACTTAAAGCGCACATTTT GCACATGTGGTGAAGGATTGATGAATGAGGAGGCAGTGGAAAAGGAGGCTGAGATTGTTGAAGGGGTGATAGCATTGATGGATGATAGTACAGAGAAACT AATGGAAGATTTCAGTATCCTGGCTTGTGAAGCAAGTGGTATAGGAGTTGTGGGTTCAGGTCACAATCTACCAATGCCACCAACAACAGGAAGATGGAAT AGGGCAGATCCAAACACAATACTAAGGGTGTTATGCCACAGAAATGATAAAGCAGCAAATCACTTCCTGAAAAAAGCTTTCCAATTAGCAAAGAGAAGAT AA
AA sequence Show only first row Show all	>Potri.008G170200.2 pacid=42806343 polypeptide=Potri.008G170200.2.p locus=Potri.008G170200 ID=Potri.008G170200.2.v4.1 annot-version=v4.1 MEKDSRCHSFSGTLTTISIDPADTDLSWPFGDLKGLNKDDIRETAYEVFFTACRSSPGFGGGRNAINFYSNHHHQHHDGDGAAGTGSPTARMGGGPVVVM SPTSRIKRALGLKMLKKSPTRRMSAVGSSGAGTAPVSPSGPLQHGGTSPALGFATVPVTGRPRRPLTSAEIMRAQMRVTEHSDNRLRKTLMRTLVGQVRI ATMGRRAETIILPLELLRHLKPSEFNDSQEYHLWQRRQLKILEAGLLLHPSIPLDKSNSYAMRLREIIHASETKPIDTGKNSDTMRTLCNSVVSLSWRSA NGTPTDVCHWADGFPLNIHIYISLLQSIFDFRDETLVLDEVDELVELIKKTWSALGINRPIHNLCFAWVLFQQYVLTSQVEPDLLYATHAMLSTEVANDA KKPDREAMYVKLLSSMLASMQGWAERRLLHYHDYFQRGDVFLIENLLPLALSASKILGEDVTITEGAGKDKGDTQIVDSSGDRVDHYIRASVKKAFAKII ETGSYKSTSLQVKDEASEALLQLAKEVKDLALRERESFSPILKKWNPIVASVAAVTLHQCYGAVLKQYIAGISTLNNETVAVLQSAGKLEKFLVQMLVED SADCEDGGKTIVREMIPYEVDSVILKLMKQWFVERLDRAKDCLSRAKDSETWNPKSKLEPYATSAAELMKIAKEAVNDFFEIPVGITDDLIYDLAEGFDN IFKDYTNLVAACGSKQSYVPTLPPLTRCNRDSKFLKLWKKAAPCSINTEDTHQFGVSDAHHPRPSTSRGTQRLYIRLNTLHYLLTHLHSLEKNLALAPRT TPSRGYHRRHRINSSSYFELALASIQTACQHVSEVAAYRLIFLDSNSVFYDSLYVADVENSRIRHALRIIKQNLSLLTAILIDRAQPLAMREVMKASFEA FLTVLLAGGCSRVFYRSDYPMIEEDFANLKRTFCTCGEGLMNEEAVEKEAEIVEGVIALMDDSTEKLMEDFSILACEASGIGVVGSGHNLPMPPTTGRWN RADPNTILRVLCHRNDKAANHFLKKAFQLAKRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33420			Protein of unknown function (D...		Potri.008G170200 [exp]	0	1
AT3G51070			S-adenosyl-L-methionine-depend...		Potri.005G118100 [exp]	9.64	0.6948
AT5G49700	AT-hook		Predicted AT-hook DNA-binding ...		Potri.001G275700 [exp]	15.96	0.7306
AT1G68800	TCP	TCP12, BRC2, TC...	BRANCHED 2, TCP domain protein...		Potri.010G130200 [exp]	19.79	0.7210	WFCYC1.1
AT5G63090	AS2	LOBB, LOB	Lateral organ boundaries (LOB)...		Potri.015G082200 [exp]	56.77	0.6575
AT5G25310			Exostosin family protein (.1)		Potri.018G025400 [exp]	65.75	0.6396
AT1G27360	SBP	SPL11	squamosa promoter-like 11 (.1....		Potri.002G142400 [exp]	101.24	0.6140

Compare expression of checked genes

Potri.008G170200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.