Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23510 1409 / 0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) AT3G23530 1407 / 0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) AT3G23470 677 / 0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) AT3G23480 638 / 0 Cyclopropane-fatty-acyl-phospholipid synthase (.1.2) AT3G23460 281 / 6e-88 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G33110 100 / 2e-22 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G33120 89 / 1e-18 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G76090 50 / 5e-06 SMT3 sterol methyltransferase 3 (.1) AT5G14220 49 / 2e-05 HEMG2, MEE61, PPO2 MATERNAL EFFECT EMBRYO ARREST 61, Flavin containing amine oxidoreductase family (.1.2) AT4G14210 46 / 0.0001 PDE226, PDS3 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G067900 [exp] 1687 / 0 AT3G23530 1392 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.010G067567 [exp] 741 / 0 AT3G23510 640 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.010G067800 [exp] 738 / 0 AT3G23510 650 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.010G067700 [exp] 726 / 0 AT3G23530 652 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.010G067600 [exp] 720 / 0 AT3G23510 647 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.018G060000 [exp] 96 / 6e-21 AT4G33110 585 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.013G077000 [exp] 54 / 2e-07 AT1G64970 441 / 8e-156 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) Potri.003G210701 [exp] 49 / 2e-05 AT1G20480 91 / 3e-18 AMP-dependent synthetase and ligase family protein (.1) Potri.T085701 [exp] 49 / 2e-05 AT1G20480 91 / 3e-18 AMP-dependent synthetase and ligase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023741 [exp] 1379 / 0 AT3G23530 1294 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Lus10011784 [exp] 1337 / 0 AT3G23530 1253 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Lus10014230 [exp] 86 / 2e-17 AT4G33110 508 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10022684 [exp] 79 / 2e-15 AT4G33110 516 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10021967 [exp] 48 / 3e-05 AT4G14210 952 / 0.0 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2) Lus10002549 [exp] 47 / 8e-05 AT4G05160 74 / 5e-13 AMP-dependent synthetase and ligase family protein (.1) Lus10041260 [exp] 47 / 9e-05 AT4G14210 951 / 0.0 PIGMENT DEFECTIVE 226, phytoene desaturase 3 (.1.2) Lus10039599 [exp] 45 / 0.0002 AT5G13700 693 / 0.0 polyamine oxidase 1 (.1) Lus10029495 [exp] 45 / 0.0002 AT5G13700 587 / 0.0 polyamine oxidase 1 (.1) Lus10027378 [exp] 45 / 0.0003 AT3G23510 51 / 2e-06 Cyclopropane-fatty-acyl-phospholipid synthase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13450 [poplar] [flax] NAD_binding_8 NAD(P)-binding Rossmann-like domain CL0063 [poplar] [flax] NADP_Rossmann PF13847 [poplar] [flax] Methyltransf_31 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Potri.008G170300.6 pacid=42807050 polypeptide=Potri.008G170300.6.p locus=Potri.008G170300 ID=Potri.008G170300.6.v4.1 annot-version=v4.1 ATGAGAGTAGCAGTGGTTGGTGCTGGGATTAGTGGACTCGTTTCAGCTTATGTTCTTGCGAAAGCTGGAGTTGAGGTTGTGCTATACGAGAAAGAGGATT ACTTAGGCGGCCATGCCAAGACTGTCAGCTTCGATGGTGTTGATTTAGACCTCGGCTTCATGGTCTTCAATCGGGTAACATATCCAAATATGATGGAGTT CTTCGAGAGCCTTGGAATAGATATGGAGTTATCGGATATGTCATTCTCAGTGAGCTTAGACGAAGGCCAGGGTTGTGAATGGGGTAGCAGAAATGGGCTG TCAGGTTTGTTTGCACAGAAGAAGAATATGTTAAATCCGTACTTTTGGAAAATGCTTCGAGAAATTATCAAGTTTAAGGATGATGTGCTCAGTTATCTTG AGATGCTTGAGAACAATCCAGATGTTGATAGGAATGAGACCTTAGGGAAATTTGTCAAGTCACGAGGTTACTCTGAATTATTTCAGAAGGCTTATCTTAT TCCCGTATGTGGTTCTATATGGTCCTGCCCTTCAGAAGGAGTCATGAGCTTTTCAGCTTTCTCTGTACTTTCATTTTGCCGTAATCATCATTTACTTGAG GTCTTTGGTCGGCCTCAGTGGCTCACTGTCACACGGCGATCACATTCTTATGTCGACAAGGTCAGAGAAAAGCTGGAAAGTTGGGGTTGCCAGATAAGAA CCGGTTGTGAGATACAGGCTGTTTCAACTACAGACGAAGGTTGCGCAGTTCTCTGTAGAGATGGCTTGCTAGAAATGTACAGTGGGTGCATAATGGCTGT CCATGCCCCAGATGCTCTGGCATTATTAGGAAAGCAAGCGACATTTGATGAGACGAGAATACTTGGTGCTTTCCAATATATGTATAGCGATATTTTCCTT CACCGTGATAAAAAGTTTATGCCCCAAAACTCAGCAGCATGGAGTGCATGGAATTTCTTAGGAAGTACTGACAATAAAGTCTGCCTGACATATTGGCTGA ATGTGCTTCAGAATATTGATGAAACAGGCCTACCTTTTCTTGTGACACTCAATCCAGATCATGCACCAGATCATACCTTGGTCAAGTGGTCAACTGGCCA TCCTGTTCCATCTGTAGCTGCAACAAAAGCTTCGCTTGAGCTTGATCATATTCAAGGCAAGAGGAGAATTTGGTTTTGTGGAGCATACCAGGGTTATGGC TTCCATGAAGATGGACTAAAGTCAGGCATGGTTGCTGCACACGGTTTGCTTGGAAACAGCTGTGCCATTCTGAGCAATCCAAAACATATGGCACCTTCTA TGTTAGAAACTGGGGCACGCCTTTTTGTTACTAGATTTCTTGGACATTATATCTCCACTGGCTGTTTAATTTTGCTGGAGGAAGGAGGCACAGTTTTCTC CTTTGAGGGAACTTCAAAAAAATGTTCACTGAAAACTGTTTTGAAGGTTCACAATCCCCAGTTTTACTGGAAGATAATGACACAGGCTGATTTAGGCCTC GCAGATGCATATATCAATGGTGATTTTTCCTTTGTTAACAAAGATGAAGGCCTTCTAAACCTTTTCATGATTCTCATTGTAAATAGAGATGCTAATAAAT CTGCATCAAAACTGAACAAGAAAAGGGGCTGGTGGACACCATTATTATTCACAGCCGGTATTGCATCTGCAAAATTTTTCATTCAGCATATATCAAGGCA AAATACTCTTACTCAAGCTCGCAGAAATATCTCTCGTCATTATGACCTGAGTAATGAGCTTTTCGCACTGTTCTTGGATGAAACAATGACGTACTCCTGT GGAGTATTTAAGACAGAAGACGAGGATTTGAAAGACGCTCAAATGAGAAAAATATCCCTTCTAATCGAAAAGGCTAGAATCAGTAAAGATCATGAAATTC TTGAGATTGGTTGTGGCTGGGGAACCTTGGCCATTGAAGCTGTCCAACGAACTGGATGTAAATACACTGGCATCACTCTATCTGAAGAACAGCTAAAATA TGCAGAAATGAAAGTGAAGGAAGCTGGCCTCCAGGACCGTATAGCATTTCACCTCTGCGACTATCGCCAATTGCCCAAGACCCACAAATACGACAGAATA ATATCCTGTGAAATGATAGAAGCCGTCGGCCATGAATACATGGAAGAGTTTTTTGGCTGCTGCGAATCAGTATTAGCAGAAAATGGGCTTCTTGTCCTAC AGTTCATATCAATACCAGAAGAAAGATATGATGAGTATAGGCAAAGCTCAGATTTTATTAAGGAATATATTTTTCCTGGTGGATGCTTGCCTTCATTAAC AAGAATAACATCAGCCATGGCCACCTCATCGAGACTGTGCGTGGAGCATGTGGAAAATATTGGAATTCATTACTATCAAACACTTAAATATTGGAGAAAG AATTTCCTGGAGAAGCAGAGAAAAATTCTTGCCCTGGGATTCAATGAGAAGTTCATCCGAACATGGGAGTATTATTTTGACTATTGTGCAGCTGGTTTCA AGACACATACACTTGGAAATTACCAGGTTGTATTTTCACGTCCTGGCAATGTTGTTGCACTAAGCAATCCATACAAAAGTTTCCCTTCAGCGTATTGA
AA sequence Show only first row Show all	>Potri.008G170300.6 pacid=42807050 polypeptide=Potri.008G170300.6.p locus=Potri.008G170300 ID=Potri.008G170300.6.v4.1 annot-version=v4.1 MRVAVVGAGISGLVSAYVLAKAGVEVVLYEKEDYLGGHAKTVSFDGVDLDLGFMVFNRVTYPNMMEFFESLGIDMELSDMSFSVSLDEGQGCEWGSRNGL SGLFAQKKNMLNPYFWKMLREIIKFKDDVLSYLEMLENNPDVDRNETLGKFVKSRGYSELFQKAYLIPVCGSIWSCPSEGVMSFSAFSVLSFCRNHHLLE VFGRPQWLTVTRRSHSYVDKVREKLESWGCQIRTGCEIQAVSTTDEGCAVLCRDGLLEMYSGCIMAVHAPDALALLGKQATFDETRILGAFQYMYSDIFL HRDKKFMPQNSAAWSAWNFLGSTDNKVCLTYWLNVLQNIDETGLPFLVTLNPDHAPDHTLVKWSTGHPVPSVAATKASLELDHIQGKRRIWFCGAYQGYG FHEDGLKSGMVAAHGLLGNSCAILSNPKHMAPSMLETGARLFVTRFLGHYISTGCLILLEEGGTVFSFEGTSKKCSLKTVLKVHNPQFYWKIMTQADLGL ADAYINGDFSFVNKDEGLLNLFMILIVNRDANKSASKLNKKRGWWTPLLFTAGIASAKFFIQHISRQNTLTQARRNISRHYDLSNELFALFLDETMTYSC GVFKTEDEDLKDAQMRKISLLIEKARISKDHEILEIGCGWGTLAIEAVQRTGCKYTGITLSEEQLKYAEMKVKEAGLQDRIAFHLCDYRQLPKTHKYDRI ISCEMIEAVGHEYMEEFFGCCESVLAENGLLVLQFISIPEERYDEYRQSSDFIKEYIFPGGCLPSLTRITSAMATSSRLCVEHVENIGIHYYQTLKYWRK NFLEKQRKILALGFNEKFIRTWEYYFDYCAAGFKTHTLGNYQVVFSRPGNVVALSNPYKSFPSAY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23510			Cyclopropane-fatty-acyl-phosph...		Potri.008G170300 [exp]	0	1
AT4G34190		SEP1	stress enhanced protein 1 (.1)		Potri.009G096800 [exp]	1.00	0.9881	SEP1.2
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Potri.013G119600 [exp]	1.41	0.9773
AT1G08810	MYB	ATMYB60	myb domain protein 60 (.1.2)		Potri.013G067500 [exp]	2.23	0.9725
AT4G30610		SCPL24, BRS1	SERINE CARBOXYPEPTIDASE 24 PRE...		Potri.018G105700 [exp]	6.00	0.9754	BRS1.1
AT2G23910			NAD(P)-binding Rossmann-fold s...		Potri.003G093700 [exp]	8.36	0.9688
AT5G66600			Protein of unknown function, D...		Potri.009G111100 [exp]	16.52	0.9603
AT1G58290		AtHEMA1, HEMA1	Arabidopsis thaliana hemA 1, G...		Potri.002G107800 [exp]	18.33	0.9667
AT4G25830			Uncharacterised protein family...		Potri.018G094500 [exp]	18.49	0.9573
AT2G41940	C2H2ZnF	ZFP8	zinc finger protein 8 (.1)		Potri.016G060600 [exp]	20.32	0.9695
AT2G46810	bHLH	bHLH070	basic helix-loop-helix (bHLH) ...		Potri.002G180300 [exp]	21.02	0.9665

Compare expression of checked genes

Potri.008G170300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.