Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14300 317 / 2e-104 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G33410 297 / 6e-97 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G55550 263 / 3e-83 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT4G26650 258 / 4e-81 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G07810 249 / 3e-77 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G47620 233 / 1e-71 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT1G58470 197 / 5e-59 XF41, ATRBP1 RNA-binding protein 1 (.1) AT1G17640 182 / 4e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G40490 169 / 2e-47 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G13224 166 / 5e-47 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G067500 [exp] 402 / 3e-137 AT4G14300 302 / 7e-99 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G258600 [exp] 319 / 2e-105 AT4G14300 277 / 1e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G195300 [exp] 314 / 2e-103 AT4G14300 305 / 2e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G361300 [exp] 259 / 3e-81 AT3G07810 433 / 1e-148 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G010200 [exp] 258 / 1e-80 AT3G07810 413 / 2e-140 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.002G222400 [exp] 257 / 2e-80 AT3G07810 439 / 8e-151 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G015700 [exp] 257 / 2e-80 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.011G088100 [exp] 254 / 2e-79 AT3G07810 428 / 1e-146 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.014G161600 [exp] 252 / 1e-78 AT3G07810 498 / 3e-174 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043124 [exp] 344 / 1e-114 AT2G33410 334 / 2e-111 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10032624 [exp] 324 / 4e-107 AT2G33410 335 / 2e-112 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10022889 [exp] 314 / 9e-104 AT4G14300 315 / 9e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10024937 [exp] 306 / 3e-100 AT4G14300 306 / 4e-101 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10023740 [exp] 277 / 2e-89 AT4G14300 276 / 6e-90 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10011783 [exp] 264 / 1e-83 AT4G14300 290 / 1e-94 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10043168 [exp] 263 / 2e-82 AT3G07810 456 / 2e-157 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10032579 [exp] 261 / 6e-82 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10039054 [exp] 248 / 3e-77 AT3G07810 428 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10039053 [exp] 248 / 6e-77 AT3G07810 417 / 1e-142 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.008G170400.1 pacid=42806147 polypeptide=Potri.008G170400.1.p locus=Potri.008G170400 ID=Potri.008G170400.1.v4.1 annot-version=v4.1 ATGGATTCAGATCAGGGAAAGCTATTTATTGGAGGGATTTCATGGGAGACGTCAGAGGAGAAGCTCGGGGAATATTTTACGCAATACGGCGACGTTTTGC AGACTGTCGTTATGAAAGATAAGACCACTGGTAGGCCTAGAGGCTTTGGCTTTGTCGTTTTTGCAGACCCTTCCGTTCTCGATAGGGTTCTTCAAGATAC GCACACTATTGATGGTAGAACGGTTGAGGCAAAGAGGGCATTATCAAGAGAGGAGCAGCAAACGAATGCCAGGGCTGGAAACTTGAATCCTGCTAGAAAC ACCAGCAGTGGTGGAAATATTCGGACCAAAAAGATATTTGTTGGAGGATTGCCTCCTACTCTAACTGACGATGGGTTTCGCCAGTATTTTGAAGCCTTTG GCCTTGTAACTGATGTAGTAATAATGTACGACCAGAGCACCCAGCGACCTCGTGGATTTGGTTTTATTTCCTTTGATTCTGAAGATGCAGTTGACCGGGT GTTACAGAGAACATTCCACGATTTGAATGGTAAGCAAGTTGAAGTAAAACGAGCTCTTCCTAAAGAGGCCAATCCTGGTGGGGGTGGCCGCTCTATGGGT GGCAGTTACCAGAGCTACGGTGCATCTGGTGGCAACACAAACTCATATGATGGTCGAATGGATTCAAGTAGGTACATGCAGCCTCAAGGCACTGGAGGTG GTTTTCCTCCTTATGGGTCATCTGGCTATAATGCAGCTGGATATGGATATGGTCCTGCCAGTAATGGTGTTGGTTATGGTGGCTATAGCAGCTATACTGG AGCTGGTGCTGGTTATGGGGGACCTGCGGGTGCGGTCTATGGGAATCCTAATGTTCCAAATCCTGGCTATGCAAGCGGTCCTCCTGGGGCACCCAGAAGT TCATGGAACAGTCAAGGTTCATCTGGCTATGGTGCTATGGGTTATGGGAGTGCTGCTTCTTGGGGTGCTTCAAATGCTAGTGCTGGCAGTGGTCCTGGTT CAGCGTCTGCTGGTCAATCTCCTGGTGGGGCCACTGGGTATGGGAGTCAAGGTTATGGGTACGGTAGTTATGGTGGAAATGATGGATCTTATGTGAATCC AGTTGGGTATGGTGCTGTTGGAGGACGTTCTGGGGGCACTTCAAACAGTAATGCTGGTGGTCCTGGCGGGGCAGAACTACAGGGTAGCGGCGGCGGCTAC ATGGGGAGTGGATATGGTGATGCAAATGGAAATTCTGGGTATGGAAATGCATCATGGAGATCAGAGCAACCACAAACTTCTGGAAATTATGGGGGTCCTC AAGCAAATGGTCCTGGTGGTTATGGTGGCGGTTATGGTGGTTCTCAGGCCCGACAAGCCCAACAACAGTGA
AA sequence Show only first row Show all	>Potri.008G170400.1 pacid=42806147 polypeptide=Potri.008G170400.1.p locus=Potri.008G170400 ID=Potri.008G170400.1.v4.1 annot-version=v4.1 MDSDQGKLFIGGISWETSEEKLGEYFTQYGDVLQTVVMKDKTTGRPRGFGFVVFADPSVLDRVLQDTHTIDGRTVEAKRALSREEQQTNARAGNLNPARN TSSGGNIRTKKIFVGGLPPTLTDDGFRQYFEAFGLVTDVVIMYDQSTQRPRGFGFISFDSEDAVDRVLQRTFHDLNGKQVEVKRALPKEANPGGGGRSMG GSYQSYGASGGNTNSYDGRMDSSRYMQPQGTGGGFPPYGSSGYNAAGYGYGPASNGVGYGGYSSYTGAGAGYGGPAGAVYGNPNVPNPGYASGPPGAPRS SWNSQGSSGYGAMGYGSAASWGASNASAGSGPGSASAGQSPGGATGYGSQGYGYGSYGGNDGSYVNPVGYGAVGGRSGGTSNSNAGGPGGAELQGSGGGY MGSGYGDANGNSGYGNASWRSEQPQTSGNYGGPQANGPGGYGGGYGGSQARQAQQQ

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14300			RNA-binding (RRM/RBD/RNP motif...		Potri.008G170400 [exp]	0	1
AT4G14300			RNA-binding (RRM/RBD/RNP motif...		Potri.010G067500 [exp]	2.64	0.8608
AT1G53750		RPT1A	regulatory particle triple-A 1...		Potri.001G161700 [exp]	2.82	0.8185	Pt-RPT1.4
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Potri.001G377400 [exp]	4.89	0.8203
AT2G29970			Double Clp-N motif-containing ...		Potri.001G252500 [exp]	10.90	0.7807
AT5G28740			Tetratricopeptide repeat (TPR)...		Potri.004G035600 [exp]	10.95	0.7916
AT3G16210			F-box family protein (.1)		Potri.012G014300 [exp]	25.65	0.7846
AT1G08610			Pentatricopeptide repeat (PPR)...		Potri.019G019200 [exp]	29.58	0.8102
AT2G46200			unknown protein		Potri.014G091400 [exp]	30.88	0.7927
AT1G53330			Pentatricopeptide repeat (PPR)...		Potri.011G108500 [exp]	33.85	0.8058
AT1G13190			RNA-binding (RRM/RBD/RNP motif...		Potri.010G051600 [exp]	35.21	0.7622

Compare expression of checked genes

Potri.008G170400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.