Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33400 69 / 4e-13 unknown protein AT5G44040 64 / 4e-11 unknown protein AT1G04030 50 / 1e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G067300 [exp] 438 / 7e-155 AT2G33400 79 / 1e-16 unknown protein Potri.002G258501 [exp] 79 / 4e-16 AT1G04030 172 / 1e-48 unknown protein Potri.013G047700 [exp] 66 / 1e-11 AT1G04030 147 / 1e-39 unknown protein Potri.002G057000 [exp] 44 / 0.0001 AT1G06660 325 / 7e-106 JASON, unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011782 [exp] 135 / 6e-37 AT2G33400 83 / 3e-18 unknown protein Lus10023739 [exp] 124 / 6e-33 AT2G33400 95 / 1e-22 unknown protein Lus10003613 [exp] 46 / 3e-05 AT1G04030 211 / 1e-63 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G170600.2 pacid=42808380 polypeptide=Potri.008G170600.2.p locus=Potri.008G170600 ID=Potri.008G170600.2.v4.1 annot-version=v4.1 ATGGGATGCTTTCTTGGCTGTTTCTGCTTGTCTTCTAGGAGAAAGCGTAGAAAACCGGCTTCTAGAGACCAAAAACTTGGTAGGTATGAACCTCTAGATT CTGTTTCTACAGATTTTGGCACAGCAGGGAATTCCATAACCTCTAAGGCTGAACTCAGCAAAAGACCTAAGGAGTCATTGAACTATAAGGTTAGAAAGAA GGTGAGCTTCAATTTGAATGTCAAGACTTATGAGCCAATTCCAAAAGAGGAGTGCAGAAATGATTACTGGGAAAGTGATGAGGAAGAGACTGACAAAGTT GCAGCAAAAGAAAGGCAATCTTCTTCTATATCTGAAGGGGATTCATCCGCGTTCAAAATGGCATCTTATCCATCAAATTATAGATATAGAAACTGCGTTG ACAGTTATGATGAAGAGTATGAAATACCACGTGAAGAAAGTGATTTGGATGATGAAGAAGAAGAATTCGACGAAGAAGATGAGGATGATGATAACAATGG CTGCGATATAGATGAATTGAGAGTAAATCAAAAGGAGTTATTTGGACAATTCAGCTCCTTATCTGTGAGCTCACAGAAAAGAAATTCTTCGACAAAGTTG GGAGACGAGGGGACAACTGAAAATCTAAAGCCCCTCGGTGATTCAAATGAGGGAGGATTGAGATCGCGCCAATATGTTCATTCTGTGCTGAAACCAGTGG AAAATCTCAGTCAATGGAAAGCAGTGAAGGCAAAGGGAACACAACCACCAAAGCAACAGAGGAAAGAAAATGTAGCATCTGAGCAACACCCACCCCTTAG TTCACTCTCGAATATCAGTCACTCCACAGCTCTCATGCAAGAAATTGCAGTTGATGCTAGCCTCTCAAACTGGGTAGTTCCTCCTGATTCTTACCAGAAG AAAACTGCATCCAATGATGTTGAGACCAATCCATCAAAGAAAAGCTTGTTTGACAGTACATATCCATGGAGAAATAAAGAAGATACGCACATTTCAGACA TTGCCACCTCGGAGACCTGCTAA
AA sequence Show only first row Show all	>Potri.008G170600.2 pacid=42808380 polypeptide=Potri.008G170600.2.p locus=Potri.008G170600 ID=Potri.008G170600.2.v4.1 annot-version=v4.1 MGCFLGCFCLSSRRKRRKPASRDQKLGRYEPLDSVSTDFGTAGNSITSKAELSKRPKESLNYKVRKKVSFNLNVKTYEPIPKEECRNDYWESDEEETDKV AAKERQSSSISEGDSSAFKMASYPSNYRYRNCVDSYDEEYEIPREESDLDDEEEEFDEEDEDDDNNGCDIDELRVNQKELFGQFSSLSVSSQKRNSSTKL GDEGTTENLKPLGDSNEGGLRSRQYVHSVLKPVENLSQWKAVKAKGTQPPKQQRKENVASEQHPPLSSLSNISHSTALMQEIAVDASLSNWVVPPDSYQK KTASNDVETNPSKKSLFDSTYPWRNKEDTHISDIATSETC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33400			unknown protein		Potri.008G170600 [exp]	0	1
AT3G20490			unknown protein		Potri.011G139200 [exp]	3.87	0.7114
AT4G01250	WRKY	ATWRKY22, WRKY2...	WRKY family transcription fact...		Potri.014G090300 [exp]	8.48	0.6871	Pt-WRKY22.2
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Potri.011G040900 [exp]	9.38	0.6410
AT4G31550	WRKY	ATWRKY11, WRKY1...	WRKY DNA-binding protein 11 (....		Potri.006G072400 [exp]	10.95	0.6443
AT4G08900		ARGAH1	arginine amidohydrolase 1, arg...		Potri.014G067700 [exp]	25.51	0.6610	Pt-PAG1.3
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Potri.005G119601 [exp]	25.92	0.6812
AT3G60190		ADL1E, ADL4, AD...	ENHANCED DISEASE RESISTANCE 3,...		Potri.014G043600 [exp]	26.07	0.5807	Pt-ADL4.1
AT2G30350			Excinuclease ABC, C subunit, N...		Potri.013G155900 [exp]	27.92	0.6199
AT2G28200	C2H2ZnF		C2H2-type zinc finger family p...		Potri.016G098100 [exp]	29.22	0.6265
AT5G42830			HXXXD-type acyl-transferase fa...		Potri.014G025550 [exp]	32.83	0.5990

Compare expression of checked genes

Potri.008G170600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.