Plant FIBer expression Database

Potri.008G170700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G33390 77 / 8e-20 unknown protein
AT1G22790 52 / 3e-09 unknown protein
AT1G55475 45 / 5e-07 unknown protein
AT1G34010 45 / 8e-07 unknown protein
AT3G13480 37 / 0.001 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G067200
[exp]
154 / 2e-50 AT2G33390 76 / 3e-19 unknown protein
Potri.002G064900
[exp]
50 / 1e-08 AT1G22790 188 / 2e-60 unknown protein
Potri.005G196300
[exp]
50 / 1e-08 AT1G22790 183 / 1e-58 unknown protein
Potri.001G003300
[exp]
43 / 4e-06 AT3G13480 85 / 4e-21 unknown protein
Potri.003G177200
[exp]
37 / 0.0002 AT1G34010 48 / 7e-08 unknown protein
Potri.001G051300
[exp]
37 / 0.0005 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023738
[exp]
67 / 1e-15 AT2G33390 73 / 2e-18 unknown protein
Lus10011781
[exp]
66 / 2e-15 AT2G33390 76 / 1e-19 unknown protein
Lus10028733
[exp]
38 / 0.0003 AT1G22790 192 / 6e-62 unknown protein
PFAM info
Representative CDS sequence
>Potri.008G170700.1 pacid=42807795 polypeptide=Potri.008G170700.1.p locus=Potri.008G170700 ID=Potri.008G170700.1.v4.1 annot-version=v4.1
ATGGAAAAGGATGTTGGTAAGGATGCTAATGGATCAAAAAACGAGCCTTTGATGATGACTTTAGACTCTCCAGATGTTGAGGAGGATGTTGAAGAGAATG
GAGAAGATTATAGTGAGTTCAAGGCTTTGTTGCCTCCTAGGAAAGGTGGGATGTCAAGAAGTCCAAACAAAGTCAGGAGAAAAGTTCAGTGGAATGATAA
TAACGGGAATAAGCTTGTGGAGATTTTAGAATTCGAACCCAGTGATGTTGGTGATTCTGATGAAGAGGATGGTAAAGATTATTGCTCATGTACAATAATG
TAG
AA sequence
>Potri.008G170700.1 pacid=42807795 polypeptide=Potri.008G170700.1.p locus=Potri.008G170700 ID=Potri.008G170700.1.v4.1 annot-version=v4.1
MEKDVGKDANGSKNEPLMMTLDSPDVEEDVEENGEDYSEFKALLPPRKGGMSRSPNKVRRKVQWNDNNGNKLVEILEFEPSDVGDSDEEDGKDYCSCTIM

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G33390 unknown protein Potri.008G170700
[exp]
0 1
AT2G29410 ATMTPB1, MTPB1 metal tolerance protein B1 (.1... Potri.001G245800
[exp]
3.46 0.6308
AT1G68090 ANN5, ANNAT5 ANNEXIN ARABIDOPSIS THALIANA 5... Potri.015G031800
[exp]
3.87 0.6519 Pt-NANN.2
AT5G63440 Protein of unknown function (D... Potri.015G094300
[exp]
16.24 0.5412
AT3G14690 CYP72A15 "cytochrome P450, family 72, s... Potri.011G101250
[exp]
24.33 0.5491
AT4G02600 MLO1, ATMLO1 MILDEW RESISTANCE LOCUS O 1, S... Potri.017G000900
[exp]
26.68 0.5851
AT1G02816 Protein of unknown function, D... Potri.014G127600
[exp]
38.97 0.5229
AT1G09740 Adenine nucleotide alpha hydro... Potri.002G104700
[exp]
40.98 0.5198
AT4G39090 EMB3005, RD19A,... RESPONSIVE TO DEHYDRATION 19A,... Potri.004G160300
[exp]
43.58 0.5451 RD19.3
AT5G05480 Peptide-N4-(N-acetyl-beta-gluc... Potri.010G185100
[exp]
46.63 0.5496
AT5G54840 ATSGP1 Ras-related small GTP-binding ... Potri.001G420700
[exp]
53.70 0.5265

Potri.008G170700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.