Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33385 411 / 1e-142 ARPC2B actin-related protein C2B (.1.2) AT1G30825 209 / 2e-64 DIS2, ARPC2, ARPC2A DISTORTED TRICHOMES 2, ACTIN-RELATED PROTEIN C2A, Arp2/3 complex, 34 kD subunit p34-Arc (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G067100 [exp] 663 / 0 AT2G33385 410 / 5e-143 actin-related protein C2B (.1.2) Potri.003G157700 [exp] 227 / 2e-71 AT1G30825 429 / 5e-152 DISTORTED TRICHOMES 2, ACTIN-RELATED PROTEIN C2A, Arp2/3 complex, 34 kD subunit p34-Arc (.1) Potri.001G073300 [exp] 226 / 8e-71 AT1G30825 449 / 1e-159 DISTORTED TRICHOMES 2, ACTIN-RELATED PROTEIN C2A, Arp2/3 complex, 34 kD subunit p34-Arc (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023737 [exp] 523 / 0 AT2G33385 397 / 1e-137 actin-related protein C2B (.1.2) Lus10011780 [exp] 280 / 3e-90 AT2G33385 228 / 9e-71 actin-related protein C2B (.1.2) Lus10008071 [exp] 224 / 3e-70 AT1G30825 456 / 6e-163 DISTORTED TRICHOMES 2, ACTIN-RELATED PROTEIN C2A, Arp2/3 complex, 34 kD subunit p34-Arc (.1) Lus10002867 [exp] 127 / 2e-33 AT1G30825 223 / 1e-71 DISTORTED TRICHOMES 2, ACTIN-RELATED PROTEIN C2A, Arp2/3 complex, 34 kD subunit p34-Arc (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04045 [poplar] [flax] P34-Arc Arp2/3 complex, 34 kD subunit p34-Arc
Representative CDS sequence Show only first row Show all	>Potri.008G170800.1 pacid=42807040 polypeptide=Potri.008G170800.1.p locus=Potri.008G170800 ID=Potri.008G170800.1.v4.1 annot-version=v4.1 ATGATTGCAAGATTTCAACTTGCTTTCTACTCGAAGTTCATAGATATAGACAAAACCTGTGGATTTGAAGTTCTATATCTCAGTTCATTTCCACCACCAT GCGAGTTAAAACTTGATAGAGGATTCTTCAACATGGCATGCTTTGAGAGGGTGTCCCCTGCACTCAAGGAGATCCTGCTCAAGTTATACCATGCTGAGAA GCCTGTGGAGATTGATCATCACTTGTATGAATTCGGGTGCGTGGAATACCATGTTCAGTCTTCTGCAGCTGATCCACAAAATAACTACCTGTCATTATCA ACTCCACTACTGTCCCAGGGAGCCCTGCTATCATGTGGTTTGTCATCGTACACTACGCAGATGGTAAAGCAAGTTTGCTCGGATGCTGTGGAGATTGTTG AACCTGCAAAAGAAGGATATCAGCTTACCCTAAAGCTAAATCTTGCAAAGATTCCACGTGGAAAAGACCCTTACAAAGTGATTACGCAAATTTCCTCAGT GCAAGCAGTTATACTATGTTCCCAGCTGAAAGAAATGTTGAGAAATGTCAATTCCCAGGACACATCCCAAGGAATGAATAAGCCAATTAAACTTGTTTAT CACCCAAGAGAGCCCTTCTATGTCATCAGACAGCCACAAAAAATCACAGCAGTATTCCCAATGCGTTTTAAAGAGCACTCAGATGTGATTATAGCAACAG CCTTCTTTCAGGAACTCATGGATGTGGGTAGTTCAGAAAAATGGGCCAAAGCACCACCATGCACCTGGTCACCCATTCCTCCGCCAGAACTGAGAGGAGA ACCTTTAGAAGATTTAAGCACCAATGGAGGGTTTGTCACTTTTGATATTTCTTCACGCCATGTTGAAGGTAAAAAACTAGACAAAACAGTATGGAGTCTA TTGAACTTCTATGCCTATGTGAAAAAACACGTGAAGGGCACCAGAGGTTTCATACAAAGAAGGATGCAAAAGCGTCTGGAAAGTTTGGTTGAGGTTCTGC ACAAGGAAAAATTGGAAGAAAATGAAGATGTTAAAAAGTTTAAAGCACATGCAGAATGTCGGTATGTTGGAAAATTGGTCGGATTATCAAAACCAAAAAA CTTTAAGAGAAGATGTCGTGATTTAACCAGGAAGATCATGCAAATTCATTTTCGGATTAAAATTCATGGATTTCGGCGTTTTCATAGACGATGGTTGACA ATCCCAAAGTTCTCTTCTCCACTGCGATATACTAAGCTAGAGTGA
AA sequence Show only first row Show all	>Potri.008G170800.1 pacid=42807040 polypeptide=Potri.008G170800.1.p locus=Potri.008G170800 ID=Potri.008G170800.1.v4.1 annot-version=v4.1 MIARFQLAFYSKFIDIDKTCGFEVLYLSSFPPPCELKLDRGFFNMACFERVSPALKEILLKLYHAEKPVEIDHHLYEFGCVEYHVQSSAADPQNNYLSLS TPLLSQGALLSCGLSSYTTQMVKQVCSDAVEIVEPAKEGYQLTLKLNLAKIPRGKDPYKVITQISSVQAVILCSQLKEMLRNVNSQDTSQGMNKPIKLVY HPREPFYVIRQPQKITAVFPMRFKEHSDVIIATAFFQELMDVGSSEKWAKAPPCTWSPIPPPELRGEPLEDLSTNGGFVTFDISSRHVEGKKLDKTVWSL LNFYAYVKKHVKGTRGFIQRRMQKRLESLVEVLHKEKLEENEDVKKFKAHAECRYVGKLVGLSKPKNFKRRCRDLTRKIMQIHFRIKIHGFRRFHRRWLT IPKFSSPLRYTKLE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33385		ARPC2B	actin-related protein C2B (.1....		Potri.008G170800 [exp]	0	1
AT2G25355			PNAS-3 related (.1.2)		Potri.015G075400 [exp]	2.23	0.8764
AT1G22060			unknown protein		Potri.002G091700 [exp]	4.24	0.8750
AT2G33385		ARPC2B	actin-related protein C2B (.1....		Potri.010G067100 [exp]	4.69	0.8870
AT5G04840	bZIP		bZIP protein (.1)		Potri.008G018400 [exp]	5.74	0.8931
AT3G62020		GLP10	germin-like protein 10 (.1.2)		Potri.002G184900 [exp]	7.34	0.8573	GLP10.1
AT1G63830			PLAC8 family protein (.1.2.3)		Potri.003G130700 [exp]	7.93	0.8795
AT1G75720			Plant protein of unknown funct...		Potri.019G021000 [exp]	8.71	0.8560
AT3G05270			Plant protein of unknown funct...		Potri.005G070400 [exp]	8.77	0.8736
AT2G03890		UBDKGAMMA7, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Potri.010G137400 [exp]	9.64	0.8435
AT4G16400			unknown protein		Potri.016G007101 [exp]	10.67	0.8308

Compare expression of checked genes

Potri.008G170800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.