Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13890 50 / 8e-07 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2), Family of unknown function (DUF716) (.3) AT3G01360 48 / 4e-06 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2) AT1G55230 42 / 0.0003 Family of unknown function (DUF716) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G067000 [exp] 449 / 9e-161 AT5G13890 50 / 9e-07 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2), Family of unknown function (DUF716) (.3) Potri.002G237200 [exp] 55 / 2e-08 AT5G13890 220 / 3e-70 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2), Family of unknown function (DUF716) (.3) Potri.005G122800 [exp] 45 / 2e-05 AT3G01360 240 / 1e-77 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2) Potri.003G216600 [exp] 41 / 0.0006 AT1G55230 419 / 9e-149 Family of unknown function (DUF716) (.1) Potri.001G009000 [exp] 40 / 0.001 AT1G55230 364 / 7e-127 Family of unknown function (DUF716) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011779 [exp] 308 / 2e-105 AT1G32120 69 / 9e-13 unknown protein Lus10023735 [exp] 157 / 2e-47 AT1G32120 51 / 1e-07 unknown protein Lus10023736 [exp] 96 / 4e-25 ND / Lus10041505 [exp] 69 / 5e-13 AT5G13890 335 / 2e-115 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2), Family of unknown function (DUF716) (.3) Lus10012588 [exp] 68 / 6e-13 AT5G13890 341 / 9e-118 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2), Family of unknown function (DUF716) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04819 [poplar] [flax] DUF716 Family of unknown function (DUF716)
Representative CDS sequence Show only first row Show all	>Potri.008G170900.3 pacid=42806142 polypeptide=Potri.008G170900.3.p locus=Potri.008G170900 ID=Potri.008G170900.3.v4.1 annot-version=v4.1 ATGGCATCTCTCGTAACCCATCTGTGTGCCAGTCTTTTCCTTCTCCCTATTGGCCTACGACGTCTCTTCTGCTCCTCTTCTCTTTACCTCAAGAACACAT CTCTTTTTAGATCCAAAACATGGTACCTCTCTGATCCCAAATGGATTAATCTTGATTTATATGCTCTCACTGTAGCCCTCCCAATTGCTTCTTTCTCTCT AATCTTTCTTTTCTTCTCTATTAGCACGGGTCATATAACTTACCGTTTCTCGTTCTTGCATCAATCATTGCTTCTATTTCTCTACTGGGTTTTGGCAATT CTGTTTGTTCTACGCGATAACATTGACCTTTTAGTCATTCTTGATAATTTCTTGTTTGTGTTTGGTGGGATTTTGTTTTTTGTAGAGTATTCTTTTATTG GTGAGGGCACTTCTGGTCTTGTTGGTGAGGCTGTTTATGGTTTGTGTGGTAATCTGAGTCTTGTTTGTGGACTTTGTTGTTTGTATTTGGCTATTAGGCC TGGTGCATTTTTTGCCGAGTATTGTTTGTGTTGTGGGTTGGTTTTGAAAGGGACTTGGTTTTTGCAAGCTGGGTTGTGTTTATATACTGATGTTTTTGGT TTGAAAGGGTGTCATAAGATTGAGATTTTGCCAGGAAGTGGAAATGTTGAGTTGAAGTGTGATCTTGAGGAAGATGGATTGAGGGGGGTGGCATTGGTGA ATTTGTTGTTTGTTGGGCATGCAATTATTGTCTTTCTTGTGAGTTTGGGGATGCTTGCATTGTTGTCAAGTAATACGAATTTGAGGCATGGTGAAGCAAG TGGTCCTTTGTTGGCAGGGCTTGAATCTGAGAGTGCTTTGATGCGGGCGCTTCCTGAATTTGAGGTGGAATGA
AA sequence Show only first row Show all	>Potri.008G170900.3 pacid=42806142 polypeptide=Potri.008G170900.3.p locus=Potri.008G170900 ID=Potri.008G170900.3.v4.1 annot-version=v4.1 MASLVTHLCASLFLLPIGLRRLFCSSSLYLKNTSLFRSKTWYLSDPKWINLDLYALTVALPIASFSLIFLFFSISTGHITYRFSFLHQSLLLFLYWVLAI LFVLRDNIDLLVILDNFLFVFGGILFFVEYSFIGEGTSGLVGEAVYGLCGNLSLVCGLCCLYLAIRPGAFFAEYCLCCGLVLKGTWFLQAGLCLYTDVFG LKGCHKIEILPGSGNVELKCDLEEDGLRGVALVNLLFVGHAIIVFLVSLGMLALLSSNTNLRHGEASGPLLAGLESESALMRALPEFEVE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13890			Family of unknown function (DU...		Potri.008G170900 [exp]	0	1
AT5G46720			AIG2-like (avirulence induced ...		Potri.003G092600 [exp]	9.69	0.8123
AT5G40190			RNA ligase/cyclic nucleotide p...		Potri.001G350300 [exp]	10.77	0.8006
AT5G19910		MED31	SOH1 family protein (.1.2)		Potri.015G110900 [exp]	15.19	0.7842
AT2G28330			unknown protein		Potri.016G142100 [exp]	32.55	0.7686
AT3G46580		MBD05, MDB5, MD...	METHYL-CPG-BINDING DOMAIN PROT...		Potri.001G240100 [exp]	41.49	0.7557	MBD905,Pt-MBD5.1
AT5G13860		ELC-LIKE, ATELC...	ELCH-like (.1)		Potri.001G034200 [exp]	42.70	0.7575
AT1G04260		PRA1.D, MPIP7, ...	PRENYLATED RAB ACCEPTOR 1.D, C...		Potri.010G077700 [exp]	46.73	0.7631	Pt-MPI7.1
AT2G19270			unknown protein		Potri.006G075000 [exp]	46.81	0.7842
					Potri.019G015800 [exp]	48.20	0.7773
					Potri.001G374901 [exp]	54.08	0.7770

Compare expression of checked genes

Potri.008G170900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.