Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-EIF(ISO)4E.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35620 250 / 4e-85 eIFiso4E, EIF(ISO)4E, EIF(ISO)4E, EIF4E2, EIF(ISO)4E, LSP1, LSP, EIF(ISO)4E, EIF(ISO)4E, EIF(ISO)4E LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1, eukaryotic translation Initiation Factor isoform 4E, EUKARYOTIC TRANSLATION INITATION FACTOR 4E2, EUKARYOTIC INITIATION FACTOR \(ISO\)4E, Eukaryotic initiation factor 4E protein (.1.2) AT4G18040 206 / 4e-67 LSP1, CUM1, AT.EIF4E1, EIF4E eukaryotic translation Initiation Factor 4E1, CUCUMOVIRUS MULTIPLICATION 1, ARABIDOPSIS THALIANA EUKARYOTIC TRANSLATION INITATION FACTOR 4E1, eukaryotic translation initiation factor 4E (.1) AT1G29550 200 / 9e-65 Eukaryotic initiation factor 4E protein (.1) AT1G29590 201 / 1e-64 eIF4E3 eukaryotic translation Initiation Factor 4E3, Eukaryotic initiation factor 4E protein (.1.2) AT5G18110 108 / 2e-29 NCBP novel cap-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G066700 [exp] 327 / 2e-115 AT5G35620 254 / 1e-86 LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1, eukaryotic translation Initiation Factor isoform 4E, EUKARYOTIC TRANSLATION INITATION FACTOR 4E2, EUKARYOTIC INITIATION FACTOR \(ISO\)4E, Eukaryotic initiation factor 4E protein (.1.2) Potri.011G077200 [exp] 236 / 2e-79 AT4G18040 299 / 1e-103 eukaryotic translation Initiation Factor 4E1, CUCUMOVIRUS MULTIPLICATION 1, ARABIDOPSIS THALIANA EUKARYOTIC TRANSLATION INITATION FACTOR 4E1, eukaryotic translation initiation factor 4E (.1) Potri.013G057000 [exp] 115 / 7e-32 AT5G18110 358 / 6e-127 novel cap-binding protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023733 [exp] 310 / 2e-108 AT5G35620 261 / 2e-89 LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1, eukaryotic translation Initiation Factor isoform 4E, EUKARYOTIC TRANSLATION INITATION FACTOR 4E2, EUKARYOTIC INITIATION FACTOR \(ISO\)4E, Eukaryotic initiation factor 4E protein (.1.2) Lus10011776 [exp] 306 / 6e-107 AT5G35620 263 / 4e-90 LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1, eukaryotic translation Initiation Factor isoform 4E, EUKARYOTIC TRANSLATION INITATION FACTOR 4E2, EUKARYOTIC INITIATION FACTOR \(ISO\)4E, Eukaryotic initiation factor 4E protein (.1.2) Lus10011988 [exp] 222 / 1e-73 AT4G18040 315 / 4e-110 eukaryotic translation Initiation Factor 4E1, CUCUMOVIRUS MULTIPLICATION 1, ARABIDOPSIS THALIANA EUKARYOTIC TRANSLATION INITATION FACTOR 4E1, eukaryotic translation initiation factor 4E (.1) Lus10005410 [exp] 220 / 9e-73 AT4G18040 318 / 3e-111 eukaryotic translation Initiation Factor 4E1, CUCUMOVIRUS MULTIPLICATION 1, ARABIDOPSIS THALIANA EUKARYOTIC TRANSLATION INITATION FACTOR 4E1, eukaryotic translation initiation factor 4E (.1) Lus10015247 [exp] 219 / 1e-72 AT4G18040 322 / 1e-112 eukaryotic translation Initiation Factor 4E1, CUCUMOVIRUS MULTIPLICATION 1, ARABIDOPSIS THALIANA EUKARYOTIC TRANSLATION INITATION FACTOR 4E1, eukaryotic translation initiation factor 4E (.1) Lus10002785 [exp] 214 / 1e-70 AT4G18040 313 / 7e-109 eukaryotic translation Initiation Factor 4E1, CUCUMOVIRUS MULTIPLICATION 1, ARABIDOPSIS THALIANA EUKARYOTIC TRANSLATION INITATION FACTOR 4E1, eukaryotic translation initiation factor 4E (.1) Lus10015251 [exp] 172 / 2e-54 AT4G18040 241 / 3e-81 eukaryotic translation Initiation Factor 4E1, CUCUMOVIRUS MULTIPLICATION 1, ARABIDOPSIS THALIANA EUKARYOTIC TRANSLATION INITATION FACTOR 4E1, eukaryotic translation initiation factor 4E (.1) Lus10005704 [exp] 113 / 5e-31 AT5G18110 345 / 6e-122 novel cap-binding protein (.1) Lus10020282 [exp] 112 / 1e-30 AT5G18110 347 / 1e-122 novel cap-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0625 [poplar] [flax] eIF4e PF01652 [poplar] [flax] IF4E Eukaryotic initiation factor 4E
Representative CDS sequence Show only first row Show all	>Potri.008G171100.1 pacid=42808114 polypeptide=Potri.008G171100.1.p locus=Potri.008G171100 ID=Potri.008G171100.1.v4.1 annot-version=v4.1 ATGGCGGCAAATGAAGCTGGTATTGAAGTAACTGCACCGACAACAGGAGAGCTGGTGACCGAGCAGCCGCAGCCGCAGCCGCAGCCGCAGCCGCATAAAC TTGAGAGGAAGTGGACCTTTTGGTTCGACAATCAATCCAAACAAGGCGCCGCCTGGGGCACTTGTCTCCGCAAGGTCTACTCCTTCGACACCGTCGAAGA ATTCTGGTGTTTGTATGAACAGGTATTTAAGCCAAGCAAGCTGCCTGGAAATGCTGATTTCCATTTATTTAAAGATGGGATTGAACCCAAATGGGAAGAT CCAGTGTGTGCTAGTGGAGGCAAGTGGTCTGTTACTTCTAGCAGAAAGGCCGACTTGGATACCATGTGGCTTGAAACTTTGATGGCTTTGATTGGGGAGC AATTTGATGAACCTGATGATATTTGTGGCGTGGTTGCAAGCGTGCGTCAGAGGCAGGATAAACTTGCTTTGTGGACTAAAGCTGCTGCCAATGAGGCTGC CCAGATGAGCATTGGCAGGAAGTGGAAGGAGATCATTGACGTCAATGACAAGATCACCTACAGCTTCCATGATGATTCCAAAAGGGAAAGAAATGCCAAA AGCCGATACAATGTGTAA
AA sequence Show only first row Show all	>Potri.008G171100.1 pacid=42808114 polypeptide=Potri.008G171100.1.p locus=Potri.008G171100 ID=Potri.008G171100.1.v4.1 annot-version=v4.1 MAANEAGIEVTAPTTGELVTEQPQPQPQPQPHKLERKWTFWFDNQSKQGAAWGTCLRKVYSFDTVEEFWCLYEQVFKPSKLPGNADFHLFKDGIEPKWED PVCASGGKWSVTSSRKADLDTMWLETLMALIGEQFDEPDDICGVVASVRQRQDKLALWTKAAANEAAQMSIGRKWKEIIDVNDKITYSFHDDSKRERNAK SRYNV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G35620		eIFiso4E, EIF(I...	LOSS OF SUSCEPTIBILITY TO POTY...		Potri.008G171100 [exp]	0	1	Pt-EIF(ISO)4E.2
AT3G55600			Membrane fusion protein Use1 (...		Potri.018G133700 [exp]	1.73	0.7213
AT3G10860			Cytochrome b-c1 complex, subun...		Potri.013G159700 [exp]	2.00	0.7413
AT1G16000			unknown protein		Potri.001G043300 [exp]	4.00	0.6924
AT1G08780		PFD4, PDF4, AIP...	PREFOLDIN 4, ABI3-interacting ...		Potri.005G054500 [exp]	4.24	0.7379
AT2G29530		TIM10	Tim10/DDP family zinc finger p...		Potri.009G039600 [exp]	16.12	0.6921	TIM10.1
AT4G26410			Uncharacterised conserved prot...		Potri.001G001300 [exp]	17.14	0.6901
AT5G03290		IDH-V	isocitrate dehydrogenase V (.1...		Potri.016G091200 [exp]	17.88	0.6576
AT2G31140			Peptidase S24/S26A/S26B/S26C f...		Potri.005G225100 [exp]	21.35	0.6393
AT4G27750		ISI1	IMPAIRED SUCROSE INDUCTION 1, ...		Potri.015G029300 [exp]	27.14	0.5512
AT1G55805			BolA-like family protein (.1)		Potri.012G036800 [exp]	29.58	0.6720

Compare expression of checked genes

Potri.008G171100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.