Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33340 829 / 0 MAC3B MOS4-associated complex 3B (.1.2.3) AT1G04510 819 / 0 MAC3A MOS4-associated complex 3A (.1.2) AT2G41500 101 / 1e-22 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT5G23430 93 / 9e-20 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G08390 92 / 3e-19 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 82 / 5e-17 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G50230 83 / 1e-16 Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 81 / 1e-16 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 82 / 2e-16 TAF5 TBP-associated factor 5 (.1) AT1G11160 79 / 5e-15 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G066000 [exp] 1036 / 0 AT2G33340 819 / 0.0 MOS4-associated complex 3B (.1.2.3) Potri.006G045800 [exp] 122 / 1e-29 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.010G255400 [exp] 97 / 8e-21 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 96 / 2e-20 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 86 / 3e-18 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 87 / 1e-17 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.005G148500 [exp] 84 / 1e-17 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G263400 [exp] 86 / 2e-17 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.018G020200 [exp] 86 / 2e-17 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023728 [exp] 875 / 0 AT2G33340 786 / 0.0 MOS4-associated complex 3B (.1.2.3) Lus10014477 [exp] 874 / 0 AT2G33340 784 / 0.0 MOS4-associated complex 3B (.1.2.3) Lus10021059 [exp] 137 / 1e-34 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10004167 [exp] 129 / 6e-32 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10013452 [exp] 92 / 5e-19 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10041007 [exp] 91 / 7e-19 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10024447 [exp] 88 / 6e-18 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1) Lus10014674 [exp] 86 / 6e-18 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 85 / 8e-18 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10018458 [exp] 86 / 5e-17 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain CL0229 [poplar] [flax] PF08606 [poplar] [flax] Prp19 Prp19/Pso4-like
Representative CDS sequence Show only first row Show all	>Potri.008G171600.2 pacid=42808746 polypeptide=Potri.008G171600.2.p locus=Potri.008G171600 ID=Potri.008G171600.2.v4.1 annot-version=v4.1 ATGCATTGCTCAATATCCGGCGAGGTTCCGGAACAGCCCGTCGTTTCGAAGAAGTCTGGGCTTTTATATGAGAAGCGCTTAATCGAGAGACACATATCGG AATATGGAAAATGCCCAATTACCGGGGAACCACTTACCATGGATGATATTGTTCCAGTCAAAACAGGCAAAATCGTGAAGCCGAGAACTGTACAGACTGC TAGCATCCCTGGGATGCTTGGGATGTTCCAGAATGAATGGGATGGCCTAATGTTGTCCAACTTTGCATTGGAGCAACAATTACATACAGCAAGGCAAGAG CTAAGTCATGCATTATACCAGCATGATGCTGCTTGTCGTGTAATTGCAAGACTTAAAAAAGAAAGAGATGAAGCAAGGTCATTGCTTGCACAAGCTGAGA GGCAGATACCCATGTCTGCATCAGAAGCTGTTACAGAAAATGCTTCAGTTCTTAGCAATGGAAAACGAGCTGCCGAGGATGATGATTTGGGTCAACCTGG GAAGAGAGTACGACCTGGAATTTCTGCTAGCATCATTACAGAGCTTACAGACTGTAATGCAACTCTTTCACAACAGCGGAAAAAGCGGCAGATTCCTCCA ACATTGGCTCCTATTGGTGCTCTAGAGAGGTACACCCAACTTTCTAGCCATCCACTTCACAAAACTAGCAAGCCGGGCATCTTATCTATTGATATCCAAT ATTCCAAGGATATCATTGCTACTGGAGGGGTTGATGCAACTGCTGTAGTCTTTGATCGGCTATCAGGACAGATTGTATCTACACTCAGTGGTCACTCAAA GAAGGTTACTAGTGTGAAATTTGTAGCCGAGGGTGAATTTTTCTTAACTGGATCAGCAGATAAGACCATTCGTGTGTGGCAAGGATCTGAAGATGGCAAC TATGATTGCAGACATATCCTAAAGGATCATACTGCGGAGGTGCAAGCTGTCACTGTTCATGCAACGAATAACTACTTCGTGACTGCTTCTCTTGACAATA CATGGTGCTTCTACGATCTCTCCTCTGGTTTATGCATGACTCAGGTTGCTGACACTTCCAAAACTGATGGCTATACATCTGCTGCCTTTCATCCTGATGG TCTCATCCTTGGAACAGGCACTTCAGAAGCAGTTGTTAAAATCTGGGATGTAAAAAGTCAGGCCAATGTTGCAAAATTCGAAGGTCATGTTGGGCCCGTA ACAGCAATATCTTTCTCAGAAAATGGATATTTCCTGGCTACTGCCGCCCATGATAGTGTTAAGCTGTGGGATCTGCGGAAATTGAAAAACTTCCGGACAC TCAATCTATATGATTCTGATACACCTACAAACTCTGTGGAATTCGACCACAGTGGATCTTACCTTGGAATTGCAGGATCAGATATAAGAGTTTACCAAGT TGGCAGTGTTAAAGCAGACTGGAATTGTATCAAAACTCTTCCTGATTTGTCCGGAACAGGAAGAGCAACTTGCTTAAAATTTGGTCCAGATGCCAATTAC ATAGCTGTGGGATCAATGGATCGCAACCTCCGGGTATTTGGCCTGCCTGGGGATGAAGCTCCATTGGAGTCATGA
AA sequence Show only first row Show all	>Potri.008G171600.2 pacid=42808746 polypeptide=Potri.008G171600.2.p locus=Potri.008G171600 ID=Potri.008G171600.2.v4.1 annot-version=v4.1 MHCSISGEVPEQPVVSKKSGLLYEKRLIERHISEYGKCPITGEPLTMDDIVPVKTGKIVKPRTVQTASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQE LSHALYQHDAACRVIARLKKERDEARSLLAQAERQIPMSASEAVTENASVLSNGKRAAEDDDLGQPGKRVRPGISASIITELTDCNATLSQQRKKRQIPP TLAPIGALERYTQLSSHPLHKTSKPGILSIDIQYSKDIIATGGVDATAVVFDRLSGQIVSTLSGHSKKVTSVKFVAEGEFFLTGSADKTIRVWQGSEDGN YDCRHILKDHTAEVQAVTVHATNNYFVTASLDNTWCFYDLSSGLCMTQVADTSKTDGYTSAAFHPDGLILGTGTSEAVVKIWDVKSQANVAKFEGHVGPV TAISFSENGYFLATAAHDSVKLWDLRKLKNFRTLNLYDSDTPTNSVEFDHSGSYLGIAGSDIRVYQVGSVKADWNCIKTLPDLSGTGRATCLKFGPDANY IAVGSMDRNLRVFGLPGDEAPLES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33340		MAC3B	MOS4-associated complex 3B (....		Potri.008G171600 [exp]	0	1
AT4G26300		EMB1027	embryo defective 1027, Arginyl...		Potri.002G198500 [exp]	1.00	0.8962
AT4G24830			arginosuccinate synthase famil...		Potri.010G239000 [exp]	2.00	0.8362
AT3G49470		NACA2	nascent polypeptide-associated...		Potri.015G003300 [exp]	3.00	0.8011
AT5G04600			RNA-binding (RRM/RBD/RNP motif...		Potri.010G234800 [exp]	4.24	0.7481
AT5G51120		PABN1, ATPABN1	polyadenylate-binding protein ...		Potri.015G110800 [exp]	5.47	0.7745
AT5G41970			Metal-dependent protein hydrol...		Potri.003G145900 [exp]	6.63	0.7933
AT5G63890		HISN8, ATHDH	HISTIDINE BIOSYNTHESIS 8, hist...		Potri.001G465300 [exp]	6.92	0.7802
AT3G02320			N2,N2-dimethylguanosine tRNA m...		Potri.017G099200 [exp]	7.34	0.7777
AT5G05920		DHS, EDA22	embryo sac development arrest ...		Potri.003G186900 [exp]	8.36	0.7783
AT5G11880			Pyridoxal-dependent decarboxyl...		Potri.009G119300 [exp]	11.66	0.7781

Compare expression of checked genes

Potri.008G171600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.