Plant FIBer expression Database

Potri.008G172000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G21865 59 / 2e-11 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G065666
[exp]
256 / 5e-88 AT4G21865 50 / 8e-08 unknown protein
Potri.014G192701
[exp]
57 / 1e-10 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023724
[exp]
133 / 3e-39 AT4G21865 55 / 2e-09 unknown protein
Lus10014471
[exp]
126 / 7e-37 AT4G21865 47 / 1e-06 unknown protein
Lus10000264
[exp]
50 / 9e-08 AT4G21865 42 / 8e-05 unknown protein
Lus10024951
[exp]
50 / 2e-07 ND 37 / 0.004
Lus10022875
[exp]
50 / 2e-07 ND 37 / 0.004
PFAM info
Representative CDS sequence
>Potri.008G172000.1 pacid=42805831 polypeptide=Potri.008G172000.1.p locus=Potri.008G172000 ID=Potri.008G172000.1.v4.1 annot-version=v4.1
ATGTACCCAAAGGTGAAGGTGAGAACAGATGGGCAAGATGATCAACCTGCACACAGCTGGAGTTCTTTGCTTTCCTTGAAGGATATCCAGTTTCTTTGTT
TGCAGGATTCTTGTTTTCCAGTGAAGGGGCACCAAGATGATTCTCCACCACCCATAGTAAGAATTCCGAAGTCTTATGTACCGAGTGTGATCATGCCAAA
AGTCTCTGTTTCTGAAGGAGCAGAGAAGAAAAACATTTTTAATGAGGAGGATAAACCAAATATCAGAGCCAGTTCAATCCCACGCCCGCGTGCTGTCTTA
TCTAGTCCTGACAATGATGCAGTGATCGGGAATAACAACAAGACTAGAGTGGCAAGGCCCTCAGCTTTGAAGAATAATAAGCTGATTCAAAATAGGCATG
AACTATGTAAAGTTGTCCCCAGTAGAATCACTGATGCTAGCCCAACAAATACAAGAAAGTCCAAGAGCACTCCTGACAATAAGATGACAATAAGAGTGAA
GTTAAAGTAA
AA sequence
>Potri.008G172000.1 pacid=42805831 polypeptide=Potri.008G172000.1.p locus=Potri.008G172000 ID=Potri.008G172000.1.v4.1 annot-version=v4.1
MYPKVKVRTDGQDDQPAHSWSSLLSLKDIQFLCLQDSCFPVKGHQDDSPPPIVRIPKSYVPSVIMPKVSVSEGAEKKNIFNEEDKPNIRASSIPRPRAVL
SSPDNDAVIGNNNKTRVARPSALKNNKLIQNRHELCKVVPSRITDASPTNTRKSKSTPDNKMTIRVKLK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G21865 unknown protein Potri.008G172000
[exp]
0 1
AT1G19180 ZIM TIFY10A, JAZ1 jasmonate-zim-domain protein 1... Potri.006G139400
[exp]
1.00 0.9743
AT5G42650 CYP74A, AOS, DD... DELAYED DEHISCENCE 2, CYTOCHRO... Potri.002G130700
[exp]
1.41 0.9667 AOS.7
AT1G07710 Ankyrin repeat family protein ... Potri.016G080700
[exp]
3.16 0.9506
AT1G72450 ZIM TIFY11B, JAZ6 TIFY DOMAIN PROTEIN 11B, jasmo... Potri.003G068900
[exp]
3.46 0.9618
AT1G17420 ATLOX3, LOX3 Arabidopsis thaliana lipoxygen... Potri.001G167700
[exp]
6.00 0.9536 LOX3.1
AT4G33050 EDA39 embryo sac development arrest ... Potri.006G226500
[exp]
6.48 0.9524
AT3G25780 AOC3, AOC2 allene oxide cyclase 3 (.1) Potri.008G117300
[exp]
6.63 0.9337
AT3G47570 Leucine-rich repeat protein ki... Potri.003G150050
[exp]
7.14 0.9396
AT2G22500 UCP5, ATPUMP5, ... DICARBOXYLATE CARRIER 1, PLANT... Potri.017G045332
[exp]
7.34 0.9511
AT4G33050 EDA39 embryo sac development arrest ... Potri.006G226400
[exp]
7.48 0.9515

Potri.008G172000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.