Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04530 138 / 7e-37 TPR4 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G17940 120 / 7e-31 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G20190 109 / 2e-26 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G80130 101 / 1e-23 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G32340 90 / 3e-20 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29670 78 / 4e-15 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G07280 73 / 1e-13 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT3G47080 72 / 4e-13 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G065400 [exp] 496 / 1e-174 AT1G04530 160 / 5e-46 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G256900 [exp] 158 / 2e-43 AT4G17940 125 / 2e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G140500 [exp] 113 / 3e-28 AT4G17940 196 / 9e-62 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G130100 [exp] 109 / 1e-26 AT5G20190 180 / 5e-55 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G130300 [exp] 108 / 4e-26 AT5G20190 166 / 2e-49 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G068200 [exp] 102 / 4e-24 AT5G20190 167 / 6e-50 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G254300 [exp] 91 / 2e-20 AT4G32340 157 / 2e-47 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G250100 [exp] 83 / 1e-16 AT2G29670 499 / 5e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G044200 [exp] 78 / 6e-15 AT2G29670 484 / 5e-166 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023721 [exp] 332 / 2e-108 AT1G04530 171 / 4e-49 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014468 [exp] 327 / 8e-107 AT1G04530 177 / 1e-51 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000257 [exp] 323 / 3e-105 AT1G04530 179 / 3e-52 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024949 [exp] 152 / 1e-40 AT4G17940 125 / 8e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022877 [exp] 147 / 5e-40 AT4G17940 121 / 5e-32 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030103 [exp] 116 / 6e-29 AT5G20190 179 / 1e-54 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002166 [exp] 113 / 6e-28 AT5G20190 192 / 8e-60 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10043266 [exp] 91 / 2e-20 AT5G20190 162 / 1e-48 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002013 [exp] 91 / 4e-20 AT4G32340 152 / 5e-45 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019409 [exp] 90 / 5e-20 AT5G20190 164 / 1e-49 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G172200.5 pacid=42806434 polypeptide=Potri.008G172200.5.p locus=Potri.008G172200 ID=Potri.008G172200.5.v4.1 annot-version=v4.1 ATGCTTCTGAGGAGCTCATCAACTTCTGCAGCTGGACCCTTGTTTTCACCCTTCTCGGACGGCCCTAATAGAGACTTTGACGCTGTTAACAACACCCACG ACACCCACACCAACCACATCAAACACCAACCAGTGTTTCATGATCACAAACTATCATTTCCTCACGGTTTGCAGCACCTCAACTTGACACCATTATCAGG CCACAGCAGCTCATCTCCATTGTCTGAACTCGATCAAGAAAAGGGTAGTTCTCGAATTAACAGCCTTCGAAGAGCTTCGTCGGATAGTAATTTGGAAAGT TTTGTCTATACATCTTCTTGTGATCAAGAAGAATTTCGTAACTCAACTACTACATCAAAGAAATTTCAATATAGACATCACAAGAGAATGTTGCACTCTT CACCTTCTTTTTCGATATTTTACAAAAATGATGAACTAGAGGATGAAGGACACAATGGAACAGATGTGGGAAGAGAAGAAGAATTGATGAGAACTATTAC AATTAGAGAAAACATAGAATCTATTGGTAGCGGGGACTTCAGTTTTGGAAAGACGAGCATGGGGTTAATAGAGGAGGAAGGAGAGAAGGAGCAGGAACAA GATTCAAACGGAATTGAGAATTTCGATATTGAAAATCTCGGTGGTAATAGTGGTGGCGGTGGTGGTTTTCATTTAAGTTTTCCGAACTTTGATGAAGATG ATGATGTGGAAGAGTATTATAAGAGGATGATTGATGAGAATCCTTTCCACCCTTTGCTCCTCTCAAACTATGCTCGGCTGTTGCAGTCCAAGGAAGACCT ACATGGAGCTGAGGAATATTATCGTCTTGCAACACTGGCAGCTCCTGCAGACGGTGAAATTCTGATGCAGTATGCGAAACTGGAATGGGAGCTGAACCAT GATCAAGATAGAGCATTAATTAACTTTGAGCGTGCAGTTCAGTCAGCCCCTCAAGACAGCAATGTTCTTGCAGCTTATGCCAGCTTTCTCTGGGAAATAG AAGACGATGGGGAAGGAAATACATTTCAACCAGAATTTATCCAGCTTCCATCTGAGCATCATATTGATCTGGAAGACCATGCTGCATCTGATGCCAACAA GGATCGCGATGCTGAGGAGTTTTATAGAGCGATGGTGGAGGCAAATCCTTGCAACTCTTTGGTTCTAAGAAATTATGCTGAGTTTCTGTATCAGTCCAAG AGAGACCTTAAAGGGGCTGAGGAATACTTCTCCCGAGCCATAGTGGCTGATCCTGGTGATGGAGAAATCCTGTCGCAATATGCAAAATTGGTGTGGGAAC TTTATCGTGACCATGATAAAGCCTTGTGTTACTTTAAACAATCAATTCAAGCAACTCCTGCTGACAGCTATGTTCTCGCAGCTTATGCTAGTTTCCTATG GGAAACAGAGGAAAATGAAGAAGATAGCACGAGTCAGTTCGAGATGCCCAATCACAATGAAGGTGCAGTAGCTGCTGCCAATGCTCAAGTGCATCATAAA TACTAG
AA sequence Show only first row Show all	>Potri.008G172200.5 pacid=42806434 polypeptide=Potri.008G172200.5.p locus=Potri.008G172200 ID=Potri.008G172200.5.v4.1 annot-version=v4.1 MLLRSSSTSAAGPLFSPFSDGPNRDFDAVNNTHDTHTNHIKHQPVFHDHKLSFPHGLQHLNLTPLSGHSSSSPLSELDQEKGSSRINSLRRASSDSNLES FVYTSSCDQEEFRNSTTTSKKFQYRHHKRMLHSSPSFSIFYKNDELEDEGHNGTDVGREEELMRTITIRENIESIGSGDFSFGKTSMGLIEEEGEKEQEQ DSNGIENFDIENLGGNSGGGGGFHLSFPNFDEDDDVEEYYKRMIDENPFHPLLLSNYARLLQSKEDLHGAEEYYRLATLAAPADGEILMQYAKLEWELNH DQDRALINFERAVQSAPQDSNVLAAYASFLWEIEDDGEGNTFQPEFIQLPSEHHIDLEDHAASDANKDRDAEEFYRAMVEANPCNSLVLRNYAEFLYQSK RDLKGAEEYFSRAIVADPGDGEILSQYAKLVWELYRDHDKALCYFKQSIQATPADSYVLAAYASFLWETEENEEDSTSQFEMPNHNEGAVAAANAQVHHK Y

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04530		TPR4	tetratricopeptide repeat 4, Te...		Potri.008G172200 [exp]	0	1
AT5G03980			SGNH hydrolase-type esterase s...		Potri.005G024966 [exp]	10.58	0.8295
					Potri.008G172250 [exp]	12.32	0.8616
AT3G02050		ATKT4, ATKUP3, ...	K+ uptake transporter 3, ARABI...		Potri.001G082267 [exp]	33.04	0.7772
					Potri.003G046101 [exp]	35.77	0.7709
AT1G29500			SAUR-like auxin-responsive pro...		Potri.002G064150 [exp]	93.19	0.6518
AT5G03890			unknown protein		Potri.015G005700 [exp]	118.59	0.7570
					Potri.001G221051 [exp]	126.42	0.7553
					Potri.006G100700 [exp]	141.40	0.6973
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Potri.012G094600 [exp]	151.09	0.5866
					Potri.001G100550 [exp]	152.47	0.6837

Compare expression of checked genes

Potri.008G172200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.