Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	IAA12.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33310 246 / 4e-81 AUX_IAA IAA13 auxin-induced protein 13 (.1.2.3) AT1G04550 233 / 2e-76 AUX_IAA BDL, IAA12 indole-3-acetic acid inducible 12, BODENLOS, AUX/IAA transcriptional regulator family protein (.1.2) AT4G28640 186 / 8e-58 AUX_IAA IAA11 indole-3-acetic acid inducible 11 (.1.2.3) AT1G04100 151 / 3e-44 AUX_IAA IAA10 indoleacetic acid-induced protein 10 (.1) AT4G14550 141 / 1e-40 AUX_IAA SLR, IAA14 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) AT3G23050 137 / 1e-38 AUX_IAA AXR2, IAA7 AUXIN RESISTANT 2, indole-3-acetic acid 7 (.1.2) AT3G16500 132 / 2e-36 AUX_IAA IAA26, PAP1 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) AT3G04730 130 / 3e-36 AUX_IAA IAA16 indoleacetic acid-induced protein 16 (.1) AT4G29080 131 / 5e-36 AUX_IAA IAA27, PAP2 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) AT1G51950 127 / 8e-35 AUX_IAA IAA18 indole-3-acetic acid inducible 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G065200 [exp] 456 / 6e-163 AT2G33310 243 / 4e-80 auxin-induced protein 13 (.1.2.3) Potri.002G256600 [exp] 218 / 2e-69 AT4G28640 191 / 6e-60 indole-3-acetic acid inducible 11 (.1.2.3) Potri.005G053900 [exp] 140 / 4e-40 AT3G04730 317 / 3e-110 indoleacetic acid-induced protein 16 (.1) Potri.005G218300 [exp] 140 / 5e-40 AT4G14550 292 / 7e-101 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.002G044900 [exp] 139 / 1e-39 AT4G14550 286 / 1e-98 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.002G108000 [exp] 141 / 4e-39 AT5G65670 355 / 4e-122 indole-3-acetic acid inducible 9 (.1.2) Potri.013G041400 [exp] 138 / 4e-39 AT3G04730 306 / 6e-106 indoleacetic acid-induced protein 16 (.1) Potri.008G161200 [exp] 136 / 3e-38 AT4G14550 343 / 1e-120 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.010G078300 [exp] 132 / 1e-36 AT4G14550 319 / 1e-110 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023719 [exp] 315 / 4e-107 AT2G33310 223 / 4e-72 auxin-induced protein 13 (.1.2.3) Lus10014464 [exp] 305 / 3e-103 AT2G33310 231 / 4e-75 auxin-induced protein 13 (.1.2.3) Lus10022868 [exp] 178 / 7e-54 AT4G28640 198 / 1e-62 indole-3-acetic acid inducible 11 (.1.2.3) Lus10034962 [exp] 151 / 2e-43 AT4G29080 289 / 4e-97 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Lus10024958 [exp] 150 / 4e-43 AT4G28640 162 / 3e-48 indole-3-acetic acid inducible 11 (.1.2.3) Lus10039414 [exp] 142 / 1e-40 AT4G14550 305 / 1e-105 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Lus10012984 [exp] 142 / 9e-40 AT4G29080 280 / 8e-94 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Lus10015907 [exp] 134 / 3e-37 AT3G04730 309 / 5e-107 indoleacetic acid-induced protein 16 (.1) Lus10042929 [exp] 135 / 5e-37 AT5G65670 356 / 3e-122 indole-3-acetic acid inducible 9 (.1.2) Lus10019241 [exp] 133 / 2e-36 AT5G65670 356 / 4e-123 indole-3-acetic acid inducible 9 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF02309 [poplar] [flax] AUX_IAA AUX/IAA family
Representative CDS sequence Show only first row Show all	>Potri.008G172400.1 pacid=42806100 polypeptide=Potri.008G172400.1.p locus=Potri.008G172400 ID=Potri.008G172400.1.v4.1 annot-version=v4.1 ATGATGGCAGGTGGTCTTGGTTCACTCGGCGGCGGCGGCGGCGGCTCTTCCGGGGCCTCCACAAATGACTCCACAATGTCAAAAGTGGAGGTGGTGGAGG CTGAGGCAAGTTCATATCCAGTGGAAGCTGAGCTGGAGCTGGGGCTGAGTCTTGGTAGTGGTGGTCGTGGTGGTGGTGGTGGAGGGAAGGGTAAGGCAAA TGCACGGGGTGAGCGTGGCAGAATCTTGACTGCCAAGGACTTTCCTTCGGTGGTCTCCCAGCCTCAAAGGCCTAACAACAACACTTCTATTTCCTCTGCT TGCGTTGTTGGTGCTGTTTCTGGGACTAAGAGAGCTGCTGACTCTGTCTCCCATGAGGGTGGATCCCCTACTGCTGGCAGTCAGGTTGTGGGGTGGCCTC CTATAAGGGCTTATCGGATGAATAGCTTGGTGAACCAAGCAAAGGCTGCAAGAGCTGAAGAAGACAAGGGAATTGGTGAGAAGGATATATCTAAGGATAA TTTGAAGAAGAAAATCTGTAATGGTAACAAGACCAGTGCTCCTAGTAATGAAAAGGGGCATCTTGGATTTGTCAAGGTGAATATGGATGGGATTCCAATT GGAAGGAAGGTAGATTTGAATGCTCATGCTTGCTATGAGACATTAGCTCAAGCATTGGAGGAAATGTTTTTCAGGTCCGCCACAACTATCAATTCCATTG GTGGCGAGAAGCGGCAAGTAACGAAGCCCTCCAAGTTATTGGATGGATTGTCCGAGTTCCTACTCACTTATGAAGATAAAGAGGGAGACTGGATGCTTGT GGGAGATGTTCCGTGGGGGATGTTCCTCAACTCAGTAAAAAGGCTTAGGATCATGAGGACCTCGGAGGCCAATGGACTTGCTCCAAGATTCCAGGATAGG AATGAGAAACAAAGAATAAAGCCTGTTTAG
AA sequence Show only first row Show all	>Potri.008G172400.1 pacid=42806100 polypeptide=Potri.008G172400.1.p locus=Potri.008G172400 ID=Potri.008G172400.1.v4.1 annot-version=v4.1 MMAGGLGSLGGGGGGSSGASTNDSTMSKVEVVEAEASSYPVEAELELGLSLGSGGRGGGGGGKGKANARGERGRILTAKDFPSVVSQPQRPNNNTSISSA CVVGAVSGTKRAADSVSHEGGSPTAGSQVVGWPPIRAYRMNSLVNQAKAARAEEDKGIGEKDISKDNLKKKICNGNKTSAPSNEKGHLGFVKVNMDGIPI GRKVDLNAHACYETLAQALEEMFFRSATTINSIGGEKRQVTKPSKLLDGLSEFLLTYEDKEGDWMLVGDVPWGMFLNSVKRLRIMRTSEANGLAPRFQDR NEKQRIKPV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33310	AUX_IAA	IAA13	auxin-induced protein 13 (.1.2...		Potri.008G172400 [exp]	0	1	IAA12.1
AT1G56700			Peptidase C15, pyroglutamyl pe...		Potri.005G005800 [exp]	2.23	0.8315
AT4G16400			unknown protein		Potri.006G017900 [exp]	2.82	0.8195
AT4G00170			Plant VAMP (vesicle-associated...		Potri.002G144800 [exp]	5.00	0.7788
AT4G29100	bHLH	bHLH068	basic helix-loop-helix (bHLH) ...		Potri.018G083700 [exp]	9.53	0.7584
AT4G37080			Protein of unknown function, D...		Potri.007G041100 [exp]	14.69	0.7642
AT3G63120		CYCP1;1	cyclin p1;1 (.1)		Potri.005G209800 [exp]	14.69	0.7558
					Potri.014G032100 [exp]	16.15	0.7534
AT1G32960		ATSBT3.3	Subtilase family protein (.1)		Potri.001G450600 [exp]	16.24	0.7298
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Potri.010G043500 [exp]	16.61	0.7838
AT5G43150			unknown protein		Potri.003G187500 [exp]	21.33	0.7265

Compare expression of checked genes

Potri.008G172400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.