Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13430 642 / 0 ATLEUC1, IIL1 isopropyl malate isomerase large subunit 1 (.1) AT4G26970 76 / 2e-14 ACO2 aconitase 2 (.1) AT2G05710 73 / 2e-13 ACO3 aconitase 3 (.1) AT4G35830 71 / 8e-13 ACO1 aconitase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G065100 [exp] 713 / 0 AT4G13430 850 / 0.0 isopropyl malate isomerase large subunit 1 (.1) Potri.014G153400 [exp] 77 / 1e-14 AT2G05710 1695 / 0.0 aconitase 3 (.1) Potri.005G108100 [exp] 74 / 6e-14 AT4G35830 1668 / 0.0 aconitase 1 (.1.2) Potri.002G229200 [exp] 74 / 1e-13 AT2G05710 1674 / 0.0 aconitase 3 (.1) Potri.007G060900 [exp] 73 / 1e-13 AT4G35830 1658 / 0.0 aconitase 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032620 [exp] 695 / 0 AT4G13430 772 / 0.0 isopropyl malate isomerase large subunit 1 (.1) Lus10043129 [exp] 690 / 0 AT4G13430 852 / 0.0 isopropyl malate isomerase large subunit 1 (.1) Lus10014463 [exp] 611 / 0 AT4G13430 702 / 0.0 isopropyl malate isomerase large subunit 1 (.1) Lus10021533 [exp] 80 / 9e-16 AT2G05710 1523 / 0.0 aconitase 3 (.1) Lus10015116 [exp] 79 / 3e-15 AT2G05710 1707 / 0.0 aconitase 3 (.1) Lus10027165 [exp] 77 / 6e-15 AT2G05710 1706 / 0.0 aconitase 3 (.1) Lus10031561 [exp] 77 / 8e-15 AT2G05710 1674 / 0.0 aconitase 3 (.1) Lus10040070 [exp] 77 / 9e-15 AT2G05710 1620 / 0.0 aconitase 3 (.1) Lus10039678 [exp] 76 / 3e-14 AT2G05710 1704 / 0.0 aconitase 3 (.1) Lus10041858 [exp] 72 / 4e-13 AT4G35830 1695 / 0.0 aconitase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00330 [poplar] [flax] Aconitase Aconitase family (aconitate hydratase)
Representative CDS sequence Show only first row Show all	>Potri.008G172500.2 pacid=42806981 polypeptide=Potri.008G172500.2.p locus=Potri.008G172500 ID=Potri.008G172500.2.v4.1 annot-version=v4.1 ATGGCTTCTTTTACTATTTCCCCTCCCTCCGCATCCTTCATCGCCAAGAAGGATCTGGGCCTCTCTGCTTTTTCTTCTTCGTCATCATCACCACCCTTTT CCGCTCCCAAGTGCAAGAAATCAGTTTCAAAGAAGATTGTATCGGTCATGGCTCCTCAGCAATCAGAGCGCATGCCTGCCACCACTGGCTCGGTGAAGAC TGCAATGACAATGACAGAGAAGATCTTCGCTAGAGCGTCTGAGGAGCCCCAGGTGAGCCCAGGTGAGAATGTTTGGGTCAACGTTGATGTCCTGATGACC CATGATATTTCTGGCCCTGGTTCTATTGGGATATTCAAGAGAGAGTTTGGACCGGATGCTAAGGTTTGGGACCGTGAAAAGGTTGTCGTTATACCAGACC ACTATATATTCACTGAAGATAAGCTTGCCAATCGCAATGTGGATATATTGAGAGATTTCTGCAATGATCAAGATATAAAGTACTTCTATGATATTAAGGA TCTTGGTAACTACAAGGCTAACCCCGACTACAAAGGTGTATGCCACGTTGCACTTGCCCAAGAAGGTCATTGCAGACCTGGAGAGGTACTGTTAGGAACA GATTCACATACATGTACTGCTGGAGCATTTGGCCAATTTGCAACTGGAATTGGAAACACTGATGCTGGTTTCGTATTAGGCACTGGGAAGCTCCTGCTCA AGGTGCCCCCAACTCTGAAATTTGTAATGGATGGTGAAATGCCTGATTATTTGCTAGCAAAGGATTTGATTCTGCAAATTATTGGTGAAATATCTGTTGC CGGTGCCACATATAAATCGATGGAGTTTGCTGGCACAACTGTTGAAAGTTTAACTATGGAAGAGCGGATGACACTATGCAACATGGTTATTGAAGCTGGG GGGAAGAATGGTGTTGTCCCTCCTGACAGTACTACATTCAAGTACCTTGAGGATAAAACGTCCCTGCCCTATGAACCAGTTTATAGCGATGTGCAAGCAA GATTTCTCACAGAGTATAGATTTGATGTCACAAAATTAGAGCCGTTGGTCGCAAAGCCTCATTCTCCTGACAATCGTGCTTTAGCAAGAGAATGTAAAGA TGTCAAAATTGACAGAGTATACATTGGATCTTGTACTGGCGGAAAAACAGAAGACTTTATGGCTGCGGCCAAAGTTTTTCTAGCTTCTGGTAAAAAGGTC AGAGTTCCCACATTCCTCGTCCCTGCTACCGGAAAGGTTTGCGATGCTGATTAA
AA sequence Show only first row Show all	>Potri.008G172500.2 pacid=42806981 polypeptide=Potri.008G172500.2.p locus=Potri.008G172500 ID=Potri.008G172500.2.v4.1 annot-version=v4.1 MASFTISPPSASFIAKKDLGLSAFSSSSSSPPFSAPKCKKSVSKKIVSVMAPQQSERMPATTGSVKTAMTMTEKIFARASEEPQVSPGENVWVNVDVLMT HDISGPGSIGIFKREFGPDAKVWDREKVVVIPDHYIFTEDKLANRNVDILRDFCNDQDIKYFYDIKDLGNYKANPDYKGVCHVALAQEGHCRPGEVLLGT DSHTCTAGAFGQFATGIGNTDAGFVLGTGKLLLKVPPTLKFVMDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFAGTTVESLTMEERMTLCNMVIEAG GKNGVVPPDSTTFKYLEDKTSLPYEPVYSDVQARFLTEYRFDVTKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFMAAAKVFLASGKKV RVPTFLVPATGKVCDAD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G13430		ATLEUC1, IIL1	isopropyl malate isomerase lar...		Potri.008G172500 [exp]	0	1
AT5G09500			Ribosomal protein S19 family p...		Potri.004G074201 [exp]	9.69	0.7584
					Potri.003G204425 [exp]	11.61	0.7390
					Potri.001G020140 [exp]	12.16	0.7381
AT3G02870		VTC4	Inositol monophosphatase famil...		Potri.010G156300 [exp]	12.84	0.6943
AT3G02870		VTC4	Inositol monophosphatase famil...		Potri.010G156500 [exp]	32.49	0.6719
AT4G20325			unknown protein		Potri.006G281101 [exp]	42.35	0.6993
AT1G54650			Methyltransferase family prote...		Potri.013G044300 [exp]	49.69	0.6766
AT3G48270		CYP71A26	"cytochrome P450, family 71, s...		Potri.015G085800 [exp]	55.09	0.7015	Pt-CYP71.2
AT2G01275			RING/FYVE/PHD zinc finger supe...		Potri.017G122300 [exp]	58.65	0.6640
AT5G13160		PBS1	avrPphB susceptible 1, Protein...		Potri.017G067900 [exp]	62.16	0.6148

Compare expression of checked genes

Potri.008G172500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.