Plant FIBer expression Database

GATB.1 (Potri.008G172700) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol GATB.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G48520 842 / 0 GATB GLU-ADT subunit B (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G064700
[exp]
867 / 0 AT1G48520 753 / 0.0 GLU-ADT subunit B (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012905
[exp]
886 / 0 AT1G48520 868 / 0.0 GLU-ADT subunit B (.1.2.3)
Lus10030559
[exp]
872 / 0 AT1G48520 850 / 0.0 GLU-ADT subunit B (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0279 GatB_YqeY PF02637 GatB_Yqey GatB domain
CL0286 GCS PF02934 GatB_N GatB/GatE catalytic domain
Representative CDS sequence
>Potri.008G172700.1 pacid=42806854 polypeptide=Potri.008G172650.1.p locus=Potri.008G172700 ID=Potri.008G172700.1.v4.1 annot-version=v4.1
ATGGCTTCCACACTGTTTAGAAACATCCAAACCCACCCGATATTGTTGTATCCAAGTGTATTGTTTAGAAGAAAGAATGGTGCCTTGTATTGCACAATGA
AAAGCAGCAGCAGCAGCACCACACAAACTCAAACAGCCACACAAGAAAAACAGCAGAACCCACAAACCAAAGTTTCTCCTCAAACTCAGACCAAAGGTAT
TGATAAACGTATAAAAGACTATGAAGCAATCATTGGTATAGAAACCCATGTCCAGCTATCCACTTTGACCAAAGCCTTTTGTGGATGTCCATACAACTAT
GGAGCTCAACCAAACACTAGCATCTGCCCCGTTTGCATGGGTTTGCCAGGTGCTTTACCAGTTTTGAACTCCAAAGTCATTGAGTTTGCTGTGAAATTAG
GTCTTGCACTTAATTGCAAGCTGTCTTTTAACTCAAAGTTTGATAGGAAACAGTATTTTTACCCTGACCTTCCAAAGGGTTACCAGATATCTCAGTTTGA
TATACCAATTGCAAGCAATGGTTATGTTGATTTGGATCTTCCGGTGGAATTTGGTGGTGGGCATAGGCGGTTTGGCATTACAAGAGTTCATATGGAAGAG
GATGCTGGAAAGCTGCTTCATTCAGGAAATGGGAGTTTTTCTCAGGTTGATTTGAACAGAGCAGGGGTGCCTTTGCTTGAGATTGTTTCTGAACCTGATA
TGAGAAATGGTATTGAAGCTGCGGAGTATGCAGCTGAAATGCAGAGGGTGGTCCGCTACTTGGGAATTAGTAATGGTAATATGCAGGAAGGCTCACTTCG
TTGTGATGTAAATGTGTCAATTCGACCAATTGGACAATCAGAGTTCGGGACAAAGGTTGAGATAAAGAATTTAAATTCATTTTCGTCAGTTAATAGGGCC
ATTGATTTTGAGATTTCAAGACAAGTGCTTCTGCACAGTCAAGGGCAAGGTAACTCAATTGTACAAGAAACTCGGCTTTGGGAAGAAGGTGCTCAGAAAA
CAGTTACGATGAGGAAAAAGGAGGGGCTTTCTGATTATAGATATTTTCCAGAACCAGACCTTCCAGAAGTTATTCTCAAAAAAGAATATGTTAATAGTAT
TCAGAATTCTTTGCCAGAACTTCCTGAAATGAAGCGCCGGAGATATGAGAACATGGGACTAAGCATGCAGGATGTTCTTTTCCTTGCAAATGACATAAAT
GTCGCAAAATTTTTTGATGCAACAATTGCCAAGGGTGCTGATGTAAAGCTGGCTACAAACTGGATAATGGGGGATATTGCTGCCTATATGAAAAATGAAA
AGGTATCTATAAATGACATTAAACTTATCCCTCGGGAGTTGGCTGAGCTTATAGCTTCTATTAAAGGTGGGACTATCAGTGGGAAGATTGGGAAAGAGAT
ACTGTTTGAGCTCATAGAAAAAGGTGGAACTGTTAAGGGACTAATAGAAGAAAAAGATCTGGTTCAGATAGTAGATCCTGCTGAAATTGAGAAGATGGTA
GATAAAGTGCTTTCAGAGAACCCAAATCAGTTGGAACAATACCGTGCTGGAAAAACCAAGATACAAGGTTATTTTGCTGGCCAGGTGATGAAATTATCAA
AAGGTAAGGCCAATCCAGGACTTCTGAACAAGATCCTTCAACAGAAACTGAACGCCTCAAGTTAA
AA sequence
>Potri.008G172700.1 pacid=42806854 polypeptide=Potri.008G172650.1.p locus=Potri.008G172700 ID=Potri.008G172700.1.v4.1 annot-version=v4.1
MASTLFRNIQTHPILLYPSVLFRRKNGALYCTMKSSSSSTTQTQTATQEKQQNPQTKVSPQTQTKGIDKRIKDYEAIIGIETHVQLSTLTKAFCGCPYNY
GAQPNTSICPVCMGLPGALPVLNSKVIEFAVKLGLALNCKLSFNSKFDRKQYFYPDLPKGYQISQFDIPIASNGYVDLDLPVEFGGGHRRFGITRVHMEE
DAGKLLHSGNGSFSQVDLNRAGVPLLEIVSEPDMRNGIEAAEYAAEMQRVVRYLGISNGNMQEGSLRCDVNVSIRPIGQSEFGTKVEIKNLNSFSSVNRA
IDFEISRQVLLHSQGQGNSIVQETRLWEEGAQKTVTMRKKEGLSDYRYFPEPDLPEVILKKEYVNSIQNSLPELPEMKRRRYENMGLSMQDVLFLANDIN
VAKFFDATIAKGADVKLATNWIMGDIAAYMKNEKVSINDIKLIPRELAELIASIKGGTISGKIGKEILFELIEKGGTVKGLIEEKDLVQIVDPAEIEKMV
DKVLSENPNQLEQYRAGKTKIQGYFAGQVMKLSKGKANPGLLNKILQQKLNASS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G48520 GATB GLU-ADT subunit B (.1.2.3) Potri.008G172700
[exp]
0 1 GATB.1
AT3G03710 PDE326, PNP, RI... resistant to inhibition with F... Potri.019G040100
[exp]
2.44 0.9604
AT5G53170 FTSH11 FTSH protease 11 (.1) Potri.012G000700
[exp]
2.82 0.9726
AT4G01800 AtcpSecA, AGY1,... Arabidopsis thaliana chloropla... Potri.014G112266
[exp]
4.24 0.9701
AT5G05740 ATEGY2 ethylene-dependent gravitropis... Potri.008G066500
[exp]
10.24 0.9598
AT5G19460 ATNUDT20 nudix hydrolase homolog 20 (.1... Potri.006G157700
[exp]
10.48 0.9404
AT4G02260 AT-RSH1, RSH1, ... RELA-SPOT HOMOLOG 1, RELA/SPOT... Potri.014G126700
[exp]
10.58 0.9539 RSH1.2
AT5G51820 STF1, PGM1, ATP... STARCH-FREE 1, ARABIDOPSIS THA... Potri.012G132500
[exp]
11.87 0.9267 Pt-PGM.4
AT4G00050 bHLH bHLH016, UNE10 unfertilized embryo sac 10, ba... Potri.002G143300
[exp]
12.84 0.9608
AT3G54660 ATGR2, EMB2360,... glutathione reductase (.1) Potri.015G037800
[exp]
13.78 0.9526 PtrcGR1,Pt-GR.3
AT2G45770 FRD4, CPFTSY FERRIC CHELATE REDUCTASE DEFEC... Potri.014G078800
[exp]
14.07 0.9538 CPFTSY.1

Potri.008G172700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.