Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10580 874 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT5G54520 196 / 4e-56 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 115 / 2e-28 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 108 / 9e-26 Transducin/WD40 repeat-like superfamily protein (.1) AT5G64730 107 / 2e-25 Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 102 / 2e-23 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT4G15900 102 / 4e-23 PRL1 pleiotropic regulatory locus 1 (.1) AT3G16650 90 / 8e-19 Transducin/WD40 repeat-like superfamily protein (.1) AT5G50230 86 / 2e-17 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 85 / 5e-17 Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G064600 [exp] 996 / 0 AT1G10580 906 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G410500 [exp] 185 / 3e-52 AT5G54520 510 / 5e-180 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 115 / 4e-28 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 110 / 2e-26 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G096900 [exp] 107 / 3e-25 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G306500 [exp] 105 / 5e-25 AT5G64730 489 / 2e-176 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 102 / 1e-23 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G087200 [exp] 101 / 1e-22 AT5G50230 801 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.003G060500 [exp] 97 / 8e-21 AT1G15440 1349 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030869 [exp] 876 / 0 AT1G10580 939 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10030620 [exp] 867 / 0 AT1G10580 926 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10014805 [exp] 158 / 5e-44 AT5G54520 403 / 2e-140 Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 114 / 1e-27 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 112 / 4e-27 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 111 / 9e-27 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 107 / 2e-25 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10012230 [exp] 102 / 2e-23 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10002860 [exp] 99 / 2e-22 AT2G43770 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10006511 [exp] 96 / 1e-20 AT4G15900 753 / 0.0 pleiotropic regulatory locus 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.008G172800.2 pacid=42806933 polypeptide=Potri.008G172800.2.p locus=Potri.008G172800 ID=Potri.008G172800.2.v4.1 annot-version=v4.1 ATGAACAAGGTAACGCACCCCTCTCCATCCCCAACGATGGATCTTCTCCAAAACTACCATAACGACGACGAATTAGACGAACATGGCCAAAACCCTAATT CCTCTCCAGATTCATCATCCCCTCCGCGCCTCCTCCCTTCCAAATCCGCCGCTCCCAAAGTGGACGACACCATGCTAGCCCTAACAGTAGCCAATCAGAC CCTCTCTAAACCTATCGACCCCGTTCAGCACGCCGTCGCCTTCAACCCTACTTACGACCAGCTATGGGCTCCGGTTCTAGGCCCCGCCCATCCCTACGCC AAGGACGGAATTGCCCAGGGCATGCGCAACCACAAACTCGGCTTCGTCGAGAACGCTGCCATCGACTCCTTCGTCTTCGACGAGCAGTACAACACTTTCC ACAAGTATGGCTACGCGGCGGACCCGTCCGCCTCTGCAGGTAATAATTATGTTGGTGATTTGGATACTTTAGAGAAAACTAATGGAATTTCTGTTTATAA CATTCCGCAACATGAACAAAAGAAGCGAAAAATTGAGAAGAAAAGGGAAGTAACCGAGGAAGAGGGTGATGGAGATGATGTAATGGATAAGGAGGAGGTC GAGAATCCGGCCACGGATGCGTGGTTGATGAAGAATAGGAAGAGCCCTTGGGCCGGTAAAAAGGAGGGATTACAAACTGAGTTGTCTGAAGAGCAGCAAA AATATGCGGAGGAGCACGCGAGAAAGAAGGCGGAGAAAGCTGGCGGTGAGAAAGGTGAGGTTGTGGCTGATAAGACTACTTTTCATGGTAAAGAAGAGAG GGATTATCAAGGGAGGTCGTGGCTTGCGCCACCTAAAGATGCTAAAGCAAGTAATGATCATTGCTATATACCTAAGAGGTTGGTGCATACATGGAGTGGG CATACTAAAGGAGTCTCTGCTATAAGGTTTTTCCCTAAATATGGGCACTTGATACTTTCTGCGGGTATGGATACAAAGGTGAAGATATGGGATGTGTTTA ATTCGGGCAAGTGTATGAGAACTTACATGGGTCATTCTAAGGCTGTTAGGGATATTTCATTTTGTAATGATGGCACTAAGTTTTTGACTGCTAGTTATGA TAAGAATATTAAGTACTGGGATACAGAGACTGGCCAGGTTATCTCTACGTTTTCAACTGGGAAGATTCCGTATGTTGTTAAGCTCAATCCTGATGATGAT AAGCAGAATATATTGTTGGCGGGCATGAGTGATAAGAAGATTGTGCAGTGGGATATGAACTCAGGGCAGATTACTCAGGAGTATGACCAGCATTTGGGGG CAGTGAATACCATCACTTTTGTGGATAATAATAGGAGATTTGTTACTTCAAGTGATGATAAATCACTCCGTGTATGGGAATTTGGGATCCCTGTTGTTAT AAAGTACATCAGTGAGCCTCACATGCATTCTATGCCGGCGATCTCTCTTCATCCCAATTCGAATTGGCTTGCTGCGCAGAGTTTGGATAACCAGATCCTT ATTTATAGTACCAGGGAAAGATTCCAGTTGAATAAGAAGAAGAGGTTCGCTGGGCACATTGTGGCTGGTTATGCTTGTCAAGTCAATTTCTCACCAGATG GACGATTTGTTATGTCAGGAGATGGTGAGGGTAAATGCTGGTTTTGGGACTGGAAGAGTTGTAAAGTTTTCAGGACCCTCAAATGTCACGAGGGAGTATG CATTGGGTGTGAGTGGCATCCACTAGAGCAAAGTAAAGTGGCAACTTGTGGCTGGGATGGCTTGATTAAATACTGGGACTAG
AA sequence Show only first row Show all	>Potri.008G172800.2 pacid=42806933 polypeptide=Potri.008G172800.2.p locus=Potri.008G172800 ID=Potri.008G172800.2.v4.1 annot-version=v4.1 MNKVTHPSPSPTMDLLQNYHNDDELDEHGQNPNSSPDSSSPPRLLPSKSAAPKVDDTMLALTVANQTLSKPIDPVQHAVAFNPTYDQLWAPVLGPAHPYA KDGIAQGMRNHKLGFVENAAIDSFVFDEQYNTFHKYGYAADPSASAGNNYVGDLDTLEKTNGISVYNIPQHEQKKRKIEKKREVTEEEGDGDDVMDKEEV ENPATDAWLMKNRKSPWAGKKEGLQTELSEEQQKYAEEHARKKAEKAGGEKGEVVADKTTFHGKEERDYQGRSWLAPPKDAKASNDHCYIPKRLVHTWSG HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVISTFSTGKIPYVVKLNPDDD KQNILLAGMSDKKIVQWDMNSGQITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPAISLHPNSNWLAAQSLDNQIL IYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10580			Transducin/WD40 repeat-like su...		Potri.008G172800 [exp]	0	1
AT1G26110		DCP5	decapping 5 (.1.2)		Potri.010G131400 [exp]	1.00	0.9262
AT3G62130		LCD	L-cysteine desulfhydrase, Pyri...		Potri.014G112700 [exp]	3.31	0.9069
AT2G01410			NHL domain-containing protein ...		Potri.001G156300 [exp]	3.46	0.9204
AT5G46840			RNA-binding (RRM/RBD/RNP motif...		Potri.001G140300 [exp]	3.74	0.9018
					Potri.005G009001 [exp]	4.24	0.9220
AT4G10760		MTA, EMB1706	EMBRYO DEFECTIVE 1706, mRNAade...		Potri.001G085200 [exp]	5.19	0.9109
AT4G35260		IDH-I, IDH1	isocitrate dehydrogenase I, is...		Potri.004G204300 [exp]	5.29	0.9150	IDH1.1
AT1G07360	C3HZnF	MAC5A	MOS4-associated complex subuni...		Potri.009G041600 [exp]	5.47	0.9207
AT1G36310			S-adenosyl-L-methionine-depend...		Potri.002G091300 [exp]	6.92	0.8992
AT3G56860		UBA2A	UBP1-associated protein 2A (.1...		Potri.001G220600 [exp]	6.92	0.9121

Compare expression of checked genes

Potri.008G172800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.