Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13460 751 / 0 SET22, SDG22, SUVH9 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) AT2G33290 719 / 0 SDG3, ATSUVH2, SUVH2 SET DOMAIN-CONTAINING PROTEIN 3, SU(VAR)3-9 homolog 2 (.1) AT1G73100 304 / 2e-93 SDG19, SUVH3 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) AT5G04940 303 / 6e-93 SUVH1 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) AT2G35160 278 / 8e-83 SGD9, SUVH5 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) AT2G22740 269 / 2e-79 SDG23, SUVH6 SET DOMAIN PROTEIN 23, SU(VAR)3-9 homolog 6 (.1), SU(VAR)3-9 homolog 6 (.2) AT5G13960 253 / 1e-74 SDG33, KYP, SUVH4 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) AT2G24740 246 / 5e-71 SUVH8, SDG21 SU\(VAR\)3-9 HOMOLOG 8, SET domain group 21 (.1) AT1G17770 243 / 3e-70 SDG17, SUVH7 SET DOMAIN PROTEIN 17, SU(VAR)3-9 homolog 7 (.1) AT5G47150 116 / 2e-28 YDG/SRA domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G064300 [exp] 1108 / 0 AT4G13460 772 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Potri.001G036800 [exp] 322 / 3e-100 AT1G73100 796 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.003G188700 [exp] 310 / 7e-96 AT1G73100 806 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.003G083100 [exp] 310 / 8e-93 AT2G35160 676 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Potri.006G027600 [exp] 298 / 2e-91 AT5G04940 583 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.016G025300 [exp] 294 / 1e-89 AT5G04940 561 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.002G237950 [exp] 252 / 8e-74 AT5G13960 709 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.014G143900 [exp] 227 / 8e-65 AT5G13960 706 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.003G162801 [exp] 222 / 2e-62 AT5G13960 529 / 8e-180 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023714 [exp] 814 / 0 AT4G13460 759 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Lus10014457 [exp] 468 / 4e-158 AT2G33290 444 / 2e-149 SET DOMAIN-CONTAINING PROTEIN 3, SU(VAR)3-9 homolog 2 (.1) Lus10029470 [exp] 309 / 4e-95 AT1G73100 762 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10008681 [exp] 306 / 2e-94 AT1G73100 738 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10026137 [exp] 301 / 3e-92 AT1G73100 757 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10011011 [exp] 295 / 4e-87 AT2G35160 620 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10040150 [exp] 277 / 3e-82 AT2G35160 568 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10001011 [exp] 281 / 4e-82 AT2G35160 615 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10031984 [exp] 258 / 9e-76 AT5G13960 764 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10041515 [exp] 255 / 5e-75 AT5G13960 792 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [poplar] [flax] SET SET domain CL0178 [poplar] [flax] PUA PF02182 [poplar] [flax] SAD_SRA SAD/SRA domain CL0178 [poplar] [flax] PF05033 [poplar] [flax] Pre-SET Pre-SET motif
Representative CDS sequence Show only first row Show all	>Potri.008G173100.3 pacid=42806086 polypeptide=Potri.008G173100.3.p locus=Potri.008G173100 ID=Potri.008G173100.3.v4.1 annot-version=v4.1 ATGGGTTCTTTGCTCCAAGACCTCAACCTTGTCCCCCCATCTCCATCCTCATCCTTAACCGCCGCCGCCGCCGCCGCCGCCGCATCCACCAGCTCCACCA TCATAGCCACCGATGGGTCCACGACGGAGGCAGCCGCAGCTTTGTTAGTCCCAAAAGTCGAACCTAAACTTGAACCATTTGATGTTGAAACCCCAATTTA CCAACCACAACAACCGCAAGACCCCACCAGCAGCTCCCAGGATCTCTTCTTTAGCAGTTCTACCCCAAATTGTTTCTCGAATTCCCAATTAACGCCTCCC CTCTCCCAGTCCACCTCCTCCGAGGACGACAATTCCAATAATCTCTATTCCGAATACAACCGAATCTCCGAGCTCTTTCGCACAGCTTTTGCCAAACGCC TGCAGGATCAATATGGCGACGTTTCAGTAGTTTCGGACCCCGATTCCCGCGCTATCGTCCCTGTTAAAGAAGGTGATAACAATGCCCTCTCATCTGTCGT GGTTTCCCAGCGGCCGAAGTACCAGAAGCGGTCTTCTGAGCTCGTGCGTGTAACAGACCTCGGACTCGAGGACCAGAGGTATTTTCGTGACTTGGTCCGC CGGACACGAATGATCTATGATTCCCTTCGGATTTTATCTGTCTTGGAGGAGGAGAAGCGACGGGGAGAACGCCTAGGACGGCGCGCGCGCGGAGATCTCC GTGCTGCCGCTACAATGAGGGATTGTGGGCTTTGGCTCAATCGGGACAAGCGGATTGTGGGGTCCATTCCTGGTGTTCAAATCGGGGATGTTTTCTTTTT TAGAATGGAACTGTGTGTTGTTGGATTGCACGGACAACCTCAGGCTGGAATTGATTATCTTCCTGCTAGCCAGAGCTCGAATAGGGAGCCTATTGCTACT AGCATTATTGTTTCAGGTGGTTATGAGGACGATGAGGATTCTGGAGATGTGATTATTTACACCGGACATGGCGGGCAGGACAGCTTGAACAAGCAATGTG AGCACCAGAAGCTGGAAGGTGGGAATTTGGCGATGGAGAGGAGTATGCATTATGGGATTGAGGTAAGAGTGATTAGAGGGATTAAACATGTAGGCAGTGT TAGTAGTAAGGTTTATGTCTATGATGGGTTGTATAAGATTCTTGATTGCTGGTTTGATGTTGGGAAATCAGGGTTTGGTGTTTATAAGTATAAGCTACTG AGGATAGATGGCCAACCAGAAATGGGTAGTTCGATCTTGAAGTTTGCGGAGACTTTGAGGACTAAGCCATTGAGTGTGAGGCCTAGAGGGTATTTAAGTC TTGATATTTCAAATAAGAAGGAGAACATGCCGGTTTTTTTGTTCAATGATATTGATAATGATCATGATCCTATGTGTTATCAGTATCTTGAACGCACCGT GTTTCCAGTCTTTGTTATTACTAATGGAAGCAATGGAACTGGATGTGATTGTGTTTCAGGATGCAGTGATGGTTGTTTTTGTGAGAGGAAGAACGGAGGT GAGTTTGCATATGATGATAATGGGTTTTTGTTGAGGGGGAAGCCAGTGGTATTTGAATGTGGGGTTTCTTGCAAGTGTCCGCCAACCTGTCGAAATAGGG TGACTCAAAGGGGACTGAGAAACAGATTGGAAGTGTTTAGGTCAATGGAAACTGGCTGGGGAGTTAGGTCGTTGGATTTGATCCATGCTGGTGCTTTTAT ATGCGAGTATGCAGGGGTTGTCATCACTAGAGAGCAAGCCCAGATTTTCACCATGAACGGTGGTGGGTTGGTTTATCCAAATAGGTTTTCTGCTAAATGG TCTGAATGGGGGGATTTGTCTCAGATCTATCCAAATTACATCCGTCCATCATATCCTGAGATTCCACCATTGGATTTTGCAATGGATGTGTCAAAAATGA GGAATGTTGCTTGTTATATGAGCCATAGTTCAACTCCAAACGTGCTGGTGCAGTTTGTGTTGTATGATCACAATAATTTGATGTTCCCTCACATCATGCT TTTTGCAATGGAGAATATCCCACCTTTAAGGGAGCTAAGCCTTGATTATGGGGTGGCTGATGAGTGGACGGGGAAGCTTGCTATCTGCAACTGA
AA sequence Show only first row Show all	>Potri.008G173100.3 pacid=42806086 polypeptide=Potri.008G173100.3.p locus=Potri.008G173100 ID=Potri.008G173100.3.v4.1 annot-version=v4.1 MGSLLQDLNLVPPSPSSSLTAAAAAAAASTSSTIIATDGSTTEAAAALLVPKVEPKLEPFDVETPIYQPQQPQDPTSSSQDLFFSSSTPNCFSNSQLTPP LSQSTSSEDDNSNNLYSEYNRISELFRTAFAKRLQDQYGDVSVVSDPDSRAIVPVKEGDNNALSSVVVSQRPKYQKRSSELVRVTDLGLEDQRYFRDLVR RTRMIYDSLRILSVLEEEKRRGERLGRRARGDLRAAATMRDCGLWLNRDKRIVGSIPGVQIGDVFFFRMELCVVGLHGQPQAGIDYLPASQSSNREPIAT SIIVSGGYEDDEDSGDVIIYTGHGGQDSLNKQCEHQKLEGGNLAMERSMHYGIEVRVIRGIKHVGSVSSKVYVYDGLYKILDCWFDVGKSGFGVYKYKLL RIDGQPEMGSSILKFAETLRTKPLSVRPRGYLSLDISNKKENMPVFLFNDIDNDHDPMCYQYLERTVFPVFVITNGSNGTGCDCVSGCSDGCFCERKNGG EFAYDDNGFLLRGKPVVFECGVSCKCPPTCRNRVTQRGLRNRLEVFRSMETGWGVRSLDLIHAGAFICEYAGVVITREQAQIFTMNGGGLVYPNRFSAKW SEWGDLSQIYPNYIRPSYPEIPPLDFAMDVSKMRNVACYMSHSSTPNVLVQFVLYDHNNLMFPHIMLFAMENIPPLRELSLDYGVADEWTGKLAICN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G13460		SET22, SDG22, S...	SETDOMAIN GROUP 22, SU(VAR)3-9...		Potri.008G173100 [exp]	0	1
					Potri.004G212751 [exp]	1.73	0.9191
AT2G44950		RDO4, HUB1	REDUCED DORMANCY 4, histone mo...		Potri.002G141300 [exp]	2.00	0.9187
AT5G20420		CHR42	chromatin remodeling 42 (.1)		Potri.010G183799 [exp]	3.46	0.9033
AT3G20640	bHLH	bHLH123	basic helix-loop-helix (bHLH) ...		Potri.011G129500 [exp]	4.58	0.8935
AT5G63320		NPX1	nuclear protein X1 (.1.2.3)		Potri.012G094300 [exp]	5.65	0.9102
AT3G26932		DRB3	dsRNA-binding protein 3 (.1.2)		Potri.005G045700 [exp]	6.24	0.8480
AT5G01960			RING/U-box superfamily protein...		Potri.006G111800 [exp]	9.38	0.8842
AT5G11700			unknown protein		Potri.006G234500 [exp]	10.19	0.8603
AT3G13300		VCS	VARICOSE, Transducin/WD40 repe...		Potri.001G469500 [exp]	12.64	0.8844	Pt-VCS.1
AT4G02560	HD	LD	luminidependens, Homeodomain-l...		Potri.014G132800 [exp]	14.38	0.8845	Pt-LD.2

Compare expression of checked genes

Potri.008G173100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.