Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05210 224 / 1e-70 Surfeit locus protein 6 (.1.2) AT2G27750 84 / 4e-19 Surfeit locus protein 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G064100 [exp] 417 / 2e-146 AT5G05210 247 / 3e-79 Surfeit locus protein 6 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023712 [exp] 247 / 2e-79 AT5G05210 284 / 1e-93 Surfeit locus protein 6 (.1.2) Lus10014455 [exp] 100 / 6e-25 AT5G05210 176 / 5e-54 Surfeit locus protein 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04935 [poplar] [flax] SURF6 Surfeit locus protein 6 PF15459 [poplar] [flax] RRP14 60S ribosome biogenesis protein Rrp14
Representative CDS sequence Show only first row Show all	>Potri.008G173300.1 pacid=42807150 polypeptide=Potri.008G173300.1.p locus=Potri.008G173300 ID=Potri.008G173300.1.v4.1 annot-version=v4.1 ATGGGCAAGAAAAAGCAAATTCTTTTCGGTGAATCAGATCCTGATATTGATCTTAAGTATCTTATTCATCAGCATTCTTTGTTGTTTGACAAGTTGATTA AACTCATCCCTGCTAAGTTCTATCTACCCACTGACGAGAAAGAGAAGCCATGGTTTCATGGCCTTAGTAAGGGTGCAAAAGCTTCAGCAAAGAAGGAGGC AAGGGAAAATATTAAGAAAGCAAGGAGGGAACGTCTTGATCCTGAGAAGTCTTCTACAACAACCCTTGATTTGTTGATGCAAAACTTGGAGAAGGAAAAA TCAAACAGCGAGAGTGATGGTGAAGAAGTGGAGATTAATCCAATGGTGTCTGGTTTAGAAAATGATGACCAATCAGTCACGTATGAAGAACTCCGGCAAC GACTTCATCGTAAAATTGAAGAGCTTCGAGGAGGTAGAGATTGTGGTAGCTCAGAGAGATCAAAGAAGAGGAGGGAGATGAAAGTGACTCTGCAAAAGAA ACGCAAGAGGGAATCTGGGTCTGTAGAAAAGAGGCCTGGCATGAGTACTTCATTGGAAAGGGTGGAGAAGGATGCAGAAGAAGCTACAAAGGAGCTCAAG TTCAGTCATGTTAAAATGGGGAATGAAGAGGAACACGGGAAGAAGAAGAAGAGGAAGGTTTCAAAGTTAAAGGAGCTTGAAAAAGCAAAAGAATTGGAAG AAGCAAAGAAAGACCCAGATAAAGGGGGCCCAGTCTCAAAGAAGCATTCATGGAAAGCAGCAACAAGTAGAGCTGCAGGAATTAAAGTTCATGATGATCC AAAGCTTCTGAAACAGAGCTTAAAGAAGGATAGCAAGAAGCATCAAAAGAATACTGAGAAGTGGAAGGAAAGGGTTGAAACCCAGCTGAAAATGAAAGCT GAGAAACAGCAAAAAAGATCAAGGAATATAGCTGACAGAATTGAACAGAAGAAGATGCGGCGGATTGAGAAGAGAGAGAGAAAGCTCACGAGGCCAGGGT TTGAAGGTCGCAAGGAAGGTTATATCAATGAAGGCTTAACTTGA
AA sequence Show only first row Show all	>Potri.008G173300.1 pacid=42807150 polypeptide=Potri.008G173300.1.p locus=Potri.008G173300 ID=Potri.008G173300.1.v4.1 annot-version=v4.1 MGKKKQILFGESDPDIDLKYLIHQHSLLFDKLIKLIPAKFYLPTDEKEKPWFHGLSKGAKASAKKEARENIKKARRERLDPEKSSTTTLDLLMQNLEKEK SNSESDGEEVEINPMVSGLENDDQSVTYEELRQRLHRKIEELRGGRDCGSSERSKKRREMKVTLQKKRKRESGSVEKRPGMSTSLERVEKDAEEATKELK FSHVKMGNEEEHGKKKKRKVSKLKELEKAKELEEAKKDPDKGGPVSKKHSWKAATSRAAGIKVHDDPKLLKQSLKKDSKKHQKNTEKWKERVETQLKMKA EKQQKRSRNIADRIEQKKMRRIEKRERKLTRPGFEGRKEGYINEGLT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05210			Surfeit locus protein 6 (.1.2)		Potri.008G173300 [exp]	0	1
AT2G42740		RPL16A	ribosomal protein large subuni...		Potri.002G109701 [exp]	2.00	0.9239
AT2G38910		CPK20	calcium-dependent protein kina...		Potri.006G199400 [exp]	8.48	0.8993	CPK20.1
AT5G53560		B5#2, ATB5-A, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Potri.014G167550 [exp]	9.16	0.8986
AT5G56000		Hsp81.4, AtHsp9...	HEAT SHOCK PROTEIN 90.4, HEAT ...		Potri.011G163932 [exp]	9.48	0.9078
AT2G45260			Plant protein of unknown funct...		Potri.014G067600 [exp]	9.59	0.9120
AT3G07440			unknown protein		Potri.007G083100 [exp]	11.48	0.8696
AT3G01790			Ribosomal protein L13 family p...		Potri.001G334000 [exp]	12.96	0.8970
AT3G27160		GHS1	GLUCOSE HYPERSENSITIVE 1, Ribo...		Potri.012G092700 [exp]	19.44	0.8600	GHS1.2
					Potri.018G145518 [exp]	19.59	0.8317
AT1G74630			Tetratricopeptide repeat (TPR)...		Potri.005G035900 [exp]	23.45	0.8373

Compare expression of checked genes

Potri.008G173300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.