Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12770 261 / 3e-79 MEF22 mitochondrial editing factor 22 (.1) AT4G18750 246 / 4e-72 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G13600 234 / 4e-69 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39350 233 / 8e-69 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 237 / 3e-68 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G68930 233 / 3e-68 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G33990 233 / 6e-68 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G24000 227 / 1e-66 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 228 / 2e-66 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49170 227 / 2e-65 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G063900 [exp] 764 / 0 AT3G12770 385 / 7e-125 mitochondrial editing factor 22 (.1) Potri.018G071800 [exp] 273 / 2e-83 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G108000 [exp] 255 / 2e-77 AT2G34400 640 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.019G074700 [exp] 244 / 2e-72 AT1G71490 878 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G466066 [exp] 243 / 2e-71 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G059400 [exp] 243 / 3e-71 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G086200 [exp] 240 / 3e-71 AT4G14820 840 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G152000 [exp] 241 / 5e-71 AT3G12770 931 / 0.0 mitochondrial editing factor 22 (.1) Potri.004G184800 [exp] 240 / 4e-70 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023710 [exp] 570 / 0 AT4G18750 385 / 3e-123 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010320 [exp] 247 / 1e-74 AT2G34400 658 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10024876 [exp] 241 / 2e-70 AT3G12770 886 / 0.0 mitochondrial editing factor 22 (.1) Lus10017446 [exp] 240 / 4e-70 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038741 [exp] 231 / 4e-68 AT3G24000 739 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006123 [exp] 231 / 5e-68 AT4G14850 923 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018223 [exp] 230 / 4e-67 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030581 [exp] 234 / 5e-67 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10031661 [exp] 227 / 5e-67 AT2G29760 427 / 3e-141 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 229 / 1e-66 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Potri.008G173500.2 pacid=42808818 polypeptide=Potri.008G173502.1.p locus=Potri.008G173500 ID=Potri.008G173500.2.v4.1 annot-version=v4.1 ATGAGAGAAGCAATTAGCCTCAGAAGCTCCCGTTATGACCATTTCGTCACTCTGGTCTCTTCAGCTAAAGATCTCCTTGATTTACTTCATCTCTCACTTA CCCACAAATCTCTCAAACTCACCCAACAATGCCATGCTCGAGTTCTCTCTCTTGGTCTCACTCAACACCCCTTTTTGGCCACAGAACTCGTCTCTGCATG CGCTAGTGTTTACCTATGGACCTCATTGATTAATGGTTGCCGTGGTGTTTTGCTTGATGATTATACACTTGCAACGATGTCAAAGGTTTTTGGTGAGATT GGTGACTTGAATTCAGGGAAATTGATTCATGGGAAAATTTTTAAAATTGGGTTTGTTTTGGATTTTATAGTCGCCAATTCTCTTATGTCAATGTATAGCA AATGTGGGGAATTTGGCGAATGTTTGAAACTGTTTGATGAAATGCCTGAAAGAAATGTGGGGGACCTTAATTTTGATAAGGATATGTCAGATTTTGTTAA AGATATGCAAATCGAGGGGTTAAAACCTGATGTAATCACAGTCTCTTCTCTTTTGAGTTTGCGTGACGGGGATATGGTGAAAAGGAACTATGGGAGAGAG CTTCGTGGGTTTATATTTCATTTGGGATCTTGCTTGATAGATATGTATTCTAGGTGTAATAAAGTTGATGTAGGTAGAAGGGTATTTGATAGCATGAAGG GTGGGAATGTTTATACTTGGACAGCAATGATCAATGGTTATGTGAAGAATGGATCTCTAGAGGAAGGACTGGTTCTTTTTCAAGAAATTCAGGTGAGGGA TGAAGTAGAACTTATTAAGGTTTCGCTTGTGAGTGTTCTTCCTGCTTGTAGCGCAGTTTCTGGTTTAATTGGTGTGAAACAAATTCATGGATATGCCATC AAGAAGGAATTTAATGATGATGTTTCCTTATGCAATGCTTTGATCGGCACTTATTCCAAGTGCGGGAGCTTGGATCATGCAAAACAAGTCTTTGAGCATG GTTCTTTTCACAGGGATCCAATATCTTGGAGTTCAATGATTTCTGGCTATGGATTGCAGGGGAAGGGAGAGGAAGCTATCTTTGTATACAACAAGATGCT TCATCTTGGGAATAAATCAGACATGATAACAATAGTAGGGGTTCTTTCTGCTTGTGGCCGGTCAGGATTGGTAGATGAAGGCCTGCGTATCTATAAATCT ACAATAAATGAATATAGGATTAAGCCAACGGTTGAGATTTGTGCTTCTTTAGATTTTATTAAATCCATGCCAATGGAACCTAGTCCAAGAGTTTGGGGGG TGCTTGTTAGTGCTTCCATAATCCATGGAAAAGCTGAGATGCAGGATCTGGCTTGTAGGTTCCTTATTCAGTTCGAACCTGAAAGCCCTCCGACTTATGT CTCACTTTCAAACTTACATGCGTCTTCCAGGAGATGGGATGTAGTATCTGAGGTGAGAACAATGATGAAAGAAAGGTGCTTAACAAAAACTACTGGGTGC AGTTGGATAAGCATTAATAACGCCCACTCATTCTTTCTATGCTGCTGA
AA sequence Show only first row Show all	>Potri.008G173500.2 pacid=42808818 polypeptide=Potri.008G173502.1.p locus=Potri.008G173500 ID=Potri.008G173500.2.v4.1 annot-version=v4.1 MREAISLRSSRYDHFVTLVSSAKDLLDLLHLSLTHKSLKLTQQCHARVLSLGLTQHPFLATELVSACASVYLWTSLINGCRGVLLDDYTLATMSKVFGEI GDLNSGKLIHGKIFKIGFVLDFIVANSLMSMYSKCGEFGECLKLFDEMPERNVGDLNFDKDMSDFVKDMQIEGLKPDVITVSSLLSLRDGDMVKRNYGRE LRGFIFHLGSCLIDMYSRCNKVDVGRRVFDSMKGGNVYTWTAMINGYVKNGSLEEGLVLFQEIQVRDEVELIKVSLVSVLPACSAVSGLIGVKQIHGYAI KKEFNDDVSLCNALIGTYSKCGSLDHAKQVFEHGSFHRDPISWSSMISGYGLQGKGEEAIFVYNKMLHLGNKSDMITIVGVLSACGRSGLVDEGLRIYKS TINEYRIKPTVEICASLDFIKSMPMEPSPRVWGVLVSASIIHGKAEMQDLACRFLIQFEPESPPTYVSLSNLHASSRRWDVVSEVRTMMKERCLTKTTGC SWISINNAHSFFLCC

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G12770		MEF22	mitochondrial editing factor ...		Potri.008G173500 [exp]	0	1
AT4G38440		IYO	MINIYO, unknown protein		Potri.009G139900 [exp]	4.69	0.8918
AT1G56690			Pentatricopeptide repeat (PPR)...		Potri.013G005400 [exp]	9.59	0.8687
AT3G61780		EMB1703	embryo defective 1703 (.1)		Potri.014G099100 [exp]	10.53	0.8773
AT1G32330	HSF	ATHSFA1D	heat shock transcription facto...		Potri.001G138900 [exp]	12.48	0.8653
AT3G26540			Tetratricopeptide repeat (TPR)...		Potri.002G075300 [exp]	12.84	0.8619
AT4G15570		MAA3	MAGATAMA 3, P-loop containing ...		Potri.017G056700 [exp]	14.28	0.8545
AT1G67440		EMB1688	embryo defective 1688, Minichr...		Potri.016G023500 [exp]	14.38	0.8242
AT3G20440		EMB2729, BE1	EMBRYO DEFECTIVE 2729, BRANCHI...		Potri.001G359200 [exp]	15.96	0.8662
AT5G61800			Pentatricopeptide repeat (PPR)...		Potri.012G110800 [exp]	16.97	0.8623
AT1G68930			pentatricopeptide (PPR) repeat...		Potri.010G136200 [exp]	20.24	0.8623

Compare expression of checked genes

Potri.008G173500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.