Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04570 502 / 7e-174 Major facilitator superfamily protein (.1) AT2G33280 448 / 2e-154 Major facilitator superfamily protein (.1) AT1G64890 280 / 2e-88 Major facilitator superfamily protein (.1) AT5G54860 197 / 2e-56 Major facilitator superfamily protein (.1) AT2G32040 111 / 7e-26 Major facilitator superfamily protein (.1) AT5G25040 92 / 1e-19 Major facilitator superfamily protein (.1.2.3) AT1G79710 87 / 4e-18 Major facilitator superfamily protein (.1) AT5G10820 85 / 2e-17 Major facilitator superfamily protein (.1) AT5G25050 69 / 2e-12 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G063800 [exp] 891 / 0 AT1G04570 523 / 0.0 Major facilitator superfamily protein (.1) Potri.019G043000 [exp] 297 / 3e-95 AT1G64890 488 / 3e-171 Major facilitator superfamily protein (.1) Potri.013G076300 [exp] 290 / 1e-92 AT1G64890 493 / 3e-173 Major facilitator superfamily protein (.1) Potri.011G137300 [exp] 196 / 4e-56 AT5G54860 633 / 0.0 Major facilitator superfamily protein (.1) Potri.011G137400 [exp] 189 / 2e-53 AT5G54860 609 / 0.0 Major facilitator superfamily protein (.1) Potri.010G085900 [exp] 116 / 2e-27 AT2G32040 650 / 0.0 Major facilitator superfamily protein (.1) Potri.018G017400 [exp] 103 / 4e-23 AT5G10820 612 / 0.0 Major facilitator superfamily protein (.1) Potri.006G265500 [exp] 97 / 4e-21 AT5G10820 620 / 0.0 Major facilitator superfamily protein (.1) Potri.001G041600 [exp] 91 / 3e-19 AT1G79710 586 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023708 [exp] 359 / 3e-118 AT1G04570 451 / 3e-154 Major facilitator superfamily protein (.1) Lus10024977 [exp] 303 / 2e-97 AT1G64890 508 / 2e-179 Major facilitator superfamily protein (.1) Lus10024529 [exp] 204 / 2e-60 AT1G64890 355 / 2e-120 Major facilitator superfamily protein (.1) Lus10004406 [exp] 139 / 7e-39 AT1G04570 108 / 2e-28 Major facilitator superfamily protein (.1) Lus10004407 [exp] 137 / 2e-38 AT2G33280 135 / 7e-39 Major facilitator superfamily protein (.1) Lus10006106 [exp] 116 / 3e-27 AT2G32040 721 / 0.0 Major facilitator superfamily protein (.1) Lus10010565 [exp] 106 / 4e-24 AT2G32040 721 / 0.0 Major facilitator superfamily protein (.1) Lus10037809 [exp] 103 / 3e-23 AT5G54860 630 / 0.0 Major facilitator superfamily protein (.1) Lus10026890 [exp] 102 / 7e-23 AT5G10820 558 / 0.0 Major facilitator superfamily protein (.1) Lus10041620 [exp] 99 / 1e-21 AT1G79710 644 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.008G173600.1 pacid=42808497 polypeptide=Potri.008G173600.1.p locus=Potri.008G173600 ID=Potri.008G173600.1.v4.1 annot-version=v4.1 ATGATTCCTTTATCAATTGCCAGTCGAAGTCCAGTTACGAAATTGTCTCCAGATAACCCAAAAATACAAATATCCTCTTCTACTAAGCTATCTCACTTGA AAGCAGTTCCATGCTCTTTTCACAGGAAAAACCCCAACACTATTTGCAACCCTGCAAAGTCCAAGACTCATCCTTTTGGCTCTGTATTAATAACCCCAGA TCACGTTTCTCATAAGAAAGGCAAGATAAACCGGGGATACGAGGAAAGAAGAGATTCTGGCCATGTGGGTAGCCAACAGATGCTGGGTTTGTGTGGGTTT GGGTATTGGATGCAGGGGTTTAGGAGTTTTCCTTGGCTTGCTCTCAACTTCCATATGGCTCACAATCTCAACTTGCATCCATCACAATTGCAGCTTTTGC AAATCTCTGGTAACCTTCCCATGGTGGCCAAACCTCTTTATGGACTCCTCTCTGATGCTTTTTACATTGGAGGTGCTCATAGAGTACCTTATATTCTCAT GGGAGTCTTTTTGCAGGTGCTGGGTTGGGGGCCGCTGGCATTGATCCCTGTTGCACGGGAAGCCCTTCCGATTCTTATTTCATGCATTCTTATCAGTAAT CTTGGCGCTTCAATCACAGAAGTAGCAAATGATGCTCTTGTCACAGAGTATGGCCAAAAAAACAGAATTGGAGGCCTCCAGTCTTATGCATTTATGGCTT TAGCTGTTGGTGGAATCCTAGGCAACTTGCTAGGTGGTTGTTTCTTACAAAAAACACCACCCCAAACCATGTTTCTTGTATTTTCAGTTCTTCTCTCTCT TCAACTAGCAACTTCATCAATAGTAAGAGAGAAATCGCTTGGTTTATTAGAACCATCAAATCACAACCTTGTGAAGACATCAATTTGGGAGAATACCAGA AAACAGCTAAGTGATCTTAAAACTGCATTAAACGAGGACAGCATCTCCCACCCTCTCACTTGGATCGTAGCTTCTATTGCTACAGTTCCGGTTCTCTCAG GTTCCATCTTTTGCTATCAAACACAGTGTCTGCATCTTGATCCTTCAATTATTGGAATGTCACGTGTAATTGGCCAGATTATGCTTCTTTCCATGACTGT ACTCTATGACCGTTATTGGAAAGAAGTGCCTATGAGGAAATTAGTTGGTGCCGTTCAGTTTTTATATGCTTCTTCTCTTCTTCTGGACTTTGTTCTAGTG AGACAGATAAATCTTAAACTGGGAATTTCCAACGAGGTATTTGCTTGTTGTTTTTCGGGTTTATCTGAAATACTTGCTCAATTTAAGCTCCTTCCTTTTT CATTGCTATTGGCTAGTTTATGTCCTCAGGGTTGTGAAGGATCTCTTACCTCTTTCTTGGCATCTTCGTTGTGTTTATCATCAATTGTCAGTGGGTTCTT GGGTGTTGGGTTAGCTTCTCTGATTGGAATAACATCTGGTGATTACTCAAGCCTGCCAATGGGAATTTTGATACAGTTCTTTGCAGCATTATTGCCTTTA GGATGGATTCATCGTGTACCCATGTCCGAACCCATTGTTGAGAAAGAAAGAAAGCAAGGTATGAGTAAAAGAACACGGAAAAATAGAAGGGTTGGAAGAG TGTTGTTAGGCTCTATTTATGTTTACCGCCGGGAAAGAGAATCTGATTCACAGAGATAA
AA sequence Show only first row Show all	>Potri.008G173600.1 pacid=42808497 polypeptide=Potri.008G173600.1.p locus=Potri.008G173600 ID=Potri.008G173600.1.v4.1 annot-version=v4.1 MIPLSIASRSPVTKLSPDNPKIQISSSTKLSHLKAVPCSFHRKNPNTICNPAKSKTHPFGSVLITPDHVSHKKGKINRGYEERRDSGHVGSQQMLGLCGF GYWMQGFRSFPWLALNFHMAHNLNLHPSQLQLLQISGNLPMVAKPLYGLLSDAFYIGGAHRVPYILMGVFLQVLGWGPLALIPVAREALPILISCILISN LGASITEVANDALVTEYGQKNRIGGLQSYAFMALAVGGILGNLLGGCFLQKTPPQTMFLVFSVLLSLQLATSSIVREKSLGLLEPSNHNLVKTSIWENTR KQLSDLKTALNEDSISHPLTWIVASIATVPVLSGSIFCYQTQCLHLDPSIIGMSRVIGQIMLLSMTVLYDRYWKEVPMRKLVGAVQFLYASSLLLDFVLV RQINLKLGISNEVFACCFSGLSEILAQFKLLPFSLLLASLCPQGCEGSLTSFLASSLCLSSIVSGFLGVGLASLIGITSGDYSSLPMGILIQFFAALLPL GWIHRVPMSEPIVEKERKQGMSKRTRKNRRVGRVLLGSIYVYRRERESDSQR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04570			Major facilitator superfamily ...		Potri.008G173600 [exp]	0	1
AT1G62710		BETAVPE, BETA-V...	beta vacuolar processing enzym...		Potri.003G113300 [exp]	2.00	0.8134
AT4G09153		LCR36	low-molecular-weight cysteine-...		Potri.001G401800 [exp]	2.23	0.8133
					Potri.008G005850 [exp]	3.00	0.8082
AT1G67710	GARP	ARR11	response regulator 11 (.1)		Potri.010G053100 [exp]	4.24	0.8291
AT1G79740			hAT transposon superfamily (.1...		Potri.018G135702 [exp]	4.47	0.8309
AT4G39210		APL3	Glucose-1-phosphate adenylyltr...		Potri.009G118800 [exp]	6.48	0.8130	Pt-APL3.2
AT1G78940			Protein kinase protein with ad...		Potri.004G170943 [exp]	8.06	0.8042
AT1G72830	CCAAT	NF-YA3, ATHAP2C...	"nuclear factor Y, subunit A3"...		Potri.018G064700 [exp]	9.38	0.8106
AT5G12330		LRP1	LATERAL ROOT PRIMORDIUM 1, Lat...		Potri.001G276200 [exp]	10.48	0.8064
AT5G57820			zinc ion binding (.1)		Potri.001G042000 [exp]	11.48	0.7837

Compare expression of checked genes

Potri.008G173600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.